Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach4g01578 ATGTACAGTAACGAAGCTTCCTCTCCATCCAGCAATGGCGGACTTGGCGCGAACCCCACCACCACCAGCAGCCAAATGCAGCCAAACGGCGGTGTCTTTGCTACGCTCTACTCTCCTTTGTTCTCTGACAAACCATCGCTCTCTGCTGCTGGTAGCGGTGTCTCACTTCACAAGTTCGAAGGAAACTCGGATTACGAGTACTCTGATTCAGCGATTCAGAGCCCTCTATATGACTCTTGCGTGATTCAGAAGCATCAGGATATGGTGAACCGCCAAAGTATCTGCCTCAGTCACCTTCTGGAAACTTCGAAATTAGAAGTCGATGCTCTGCGACAAGAGAACACCCATCTTCGGGCTGTGAATCGCGAGCTGAACAATCAGTTGAGTCTTGTGCTTCAGGCCTCGGTTCAGAACCAATTTGATGGTTCCTCTGGCCATACCACAGCGTTTGACATTGCAAATGGGTTTCGTGGTCTCCATATTGGAGACACCGGAGAAGGGAAAGAGAACTTTGCTGATTGGAAGGACCAGGAAGTGTCTGATGAGAGCCCAACTAGCGTCATTGAGAGCCCTGTTGAAGTGGAGAGGTTCTCGCTGCCAAAGAGCATATCTGTGAGGTCAAACGGGTACTTGAAGATGACCCAGACCGGTGCAAGTGCTAGCAATTCAAGCCGCAACAAAAGCGCTACTCGGCCACGAACTACCTCGAGTCCCCTTGATGTCGTTCATAAGGTATATGTGCGCGGAGGGAAGCAGGAGCAAGAGCCCCTTGAGATGGTAGTATACAACCAAGGCATGTTCAAAACAGAGCTGTGCAACAAATGGCAGGAGACTGGTGCTTGCCCTTATGGAGATCACTGCCAATTTGCTCATGGAATTGACGAGCTCCGTCCAGTGATCCGCCACCCACGCTACAAGACAGAGGTCTGCAGGATGATCCTTGCTGGAGTTGTCTGCCCATATGGTCATAGATGCCATTTCCGCCATGCACTCACTGAACAAGAGAAGGCCATAGCACAGCCTAAATCCAGGGCAATGAAGCTGGAAAAATAA 1053 0.5052 MYSNEASSPSSNGGLGANPTTTSSQMQPNGGVFATLYSPLFSDKPSLSAAGSGVSLHKFEGNSDYEYSDSAIQSPLYDSCVIQKHQDMVNRQSICLSHLLETSKLEVDALRQENTHLRAVNRELNNQLSLVLQASVQNQFDGSSGHTTAFDIANGFRGLHIGDTGEGKENFADWKDQEVSDESPTSVIESPVEVERFSLPKSISVRSNGYLKMTQTGASASNSSRNKSATRPRTTSSPLDVVHKVYVRGGKQEQEPLEMVVYNQGMFKTELCNKWQETGACPYGDHCQFAHGIDELRPVIRHPRYKTEVCRMILAGVVCPYGHRCHFRHALTEQEKAIAQPKSRAMKLEK 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach4g01578 350 ProSiteProfiles Zinc finger C3H1-type profile. 304 332 IPR000571 GO:0046872
Bach4g01578 350 Gene3D - 300 336 - -
Bach4g01578 350 Gene3D - 261 299 - -
Bach4g01578 350 PANTHER CCCH ZINC FINGER/TIS11-RELATED 85 339 IPR045877 GO:0003729
Bach4g01578 350 SUPERFAMILY CCCH zinc finger 300 334 IPR036855 GO:0046872
Bach4g01578 350 Coils Coil 107 127 - -
Bach4g01578 350 SUPERFAMILY CCCH zinc finger 263 298 IPR036855 GO:0046872
Bach4g01578 350 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 267 292 IPR000571 GO:0046872
Bach4g01578 350 ProSiteProfiles Zinc finger C3H1-type profile. 266 294 IPR000571 GO:0046872
Bach4g01578 350 MobiDBLite consensus disorder prediction 215 236 - -
Bach4g01578 350 SMART c3hfinal6 266 293 IPR000571 GO:0046872
Bach4g01578 350 SMART c3hfinal6 304 331 IPR000571 GO:0046872
Bach4g01578 350 MobiDBLite consensus disorder prediction 1 28 - -
Bach4g01578 350 FunFam zinc finger CCCH domain-containing protein 15-like 260 299 - -
Bach4g01578 350 FunFam Zinc finger protein 36, C3H1 type-like 1 300 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach4g01578 Bach-Chr4 11979298 11981397 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach4g01578 67 348 C3H Transcription Factor Family AT1G68200 52.055 1.72e-85 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bach4g01578 zf-CCCH 5e-12 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach4g01578 K18753 - qsa:O6P43_025764 436.417