Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach4g01505 ATGAAGGTTTTCGTAAAGACTCTTAAAGGCACCCACTTTGAAATTGAAGTGAAGCCTGAAGACATGGTTGCTGATGTGAAAAAAAATATAGAAACTGTTCAGGGTGCAGATGTTTATCCTTCTGCACAGCAAATGCTTATCCATCAAGGGAAAGTTCTCAAAGATGGCACAACCTTGGAGGAAAATAAAGTAGCTGAAAATAGTTTCATTGTAATTATGCTATCAAAGAGTAAAAGCTCATCTGGAGAGGGTTCTACTGCAACTGCTGCTAAGGCCCCACAGACAAGTTCAGCTCCTACTCCTGCCCCGTTGCCTCTAGCACCTGCTGCGGCACCGCCTGCTCCTGCTCTTGAAGCTGCTCCTGCTCCTGAAGCTGCTCCCGCTCCTGAAGCTACTCCTGCTCCTGCTCCTATCTCATCTGGCGCTGCTGTCAGGTCAGTATCTGATGTCTATGGGCAGGCAGCTTCTAATCTTGTTGCTGGAACCAACTTGGAGGAAACAATTCAGCAAATTCTTGATGTAGGGGGAGGAAGTTGGGATAGGGATACTGTTGTCCGTGCTCTACGAGCTGCATACAACAACCCTGAGAGAGCTGTTGAATATTTGTATAGTGGTATCCCAGAGCAAGCTGATGCCCCACCTGTTACCCGAGTGCCAGCTACTGTGCAGACCACAAATCCTCCAGCTCCACAGGGGGCACAGCCAGCATCTGCTCCAGCTTCTACTCCAGCATCTGCTCCATCTAGTGGACCTAATGCTAATCCTTTAGACCTCTTTCCCCAGGGTCTTCCCAATGTGGGTTCTGGTGCCGCTGGGGCAGGCAATCTTGATTTTTTGCGCAACAGTCAACAGTTCCAAGCGTTGCGAGCCATGGTGCAGGCTAATCCACAAATTTTGCAGCCTATGCTTCAAGAACTTGGGAAACAAAATCCTCATCTTATGCGGTTGATCCAAGAGCATCAAACTGACTTCCTTCGCTTGATAAATGAACCAATGGAAGGGGGGGAGGGGAATATATTGAATCAGCTGGCTGCTGCTATGCCTCAAGCAGTTACTGTCACCCCTGAGGAGCGCCAAGCCATTGAACGCCTTGAAGCAATGGGCTTTGATCGTGCACTTGTATTGGAAGTGTACTTTGCTTGCAACAAAAATGAGGAATTGGCTGCCAACTACCTTTTAGATCACATGCACGAGTTTGAGGAATGATACTTGTCTTTTCCAACTCCTTTTCTTGAGTCTTGTCTTCGTTATATTTAATGTTAATGTTAACGATGCAATGTTTGATAATGTGAATTCTCGAGTGGACAAAGGGATATTTTTACCTCCTCCGCATTATTATCCTTGTATTTATCATTTTCTTTTCTGTCTAGGATTCTTCTC 1380 0.4623 MKVFVKTLKGTHFEIEVKPEDMVADVKKNIETVQGADVYPSAQQMLIHQGKVLKDGTTLEENKVAENSFIVIMLSKSKSSSGEGSTATAAKAPQTSSAPTPAPLPLAPAAAPPAPALEAAPAPEAAPAPEATPAPAPISSGAAVRSVSDVYGQAASNLVAGTNLEETIQQILDVGGGSWDRDTVVRALRAAYNNPERAVEYLYSGIPEQADAPPVTRVPATVQTTNPPAPQGAQPASAPASTPASAPSSGPNANPLDLFPQGLPNVGSGAAGAGNLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPMEGGEGNILNQLAAAMPQAVTVTPEERQAIERLEAMGFDRALVLEVYFACNKNEELAANYLLDHMHEFEE 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach4g01505 401 SMART ubq_7 1 75 IPR000626 GO:0005515
Bach4g01505 401 MobiDBLite consensus disorder prediction 220 262 - -
Bach4g01505 401 Gene3D - 349 396 - -
Bach4g01505 401 MobiDBLite consensus disorder prediction 79 140 - -
Bach4g01505 401 MobiDBLite consensus disorder prediction 98 134 - -
Bach4g01505 401 CDD UBA1_Rad23_plant 158 207 - -
Bach4g01505 401 SUPERFAMILY Ubiquitin-like 1 79 IPR029071 -
Bach4g01505 401 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 354 395 IPR015940 -
Bach4g01505 401 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Bach4g01505 401 FunFam UV excision repair protein RAD23 B 267 332 - -
Bach4g01505 401 SMART CBM 274 317 IPR006636 -
Bach4g01505 401 SUPERFAMILY UBA-like 162 211 IPR009060 GO:0005515
Bach4g01505 401 FunFam UV excision repair protein RAD23 homolog 157 207 - -
Bach4g01505 401 CDD Ubl_Rad23 1 74 - -
Bach4g01505 401 SUPERFAMILY XPC-binding domain 272 338 IPR036353 GO:0003684|GO:0006289|GO:0043161
Bach4g01505 401 FunFam UV excision repair protein RAD23 homolog 348 396 - -
Bach4g01505 401 Pfam XPC-binding domain 276 331 IPR015360 GO:0003684|GO:0006289|GO:0043161
Bach4g01505 401 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Bach4g01505 401 Gene3D - 157 207 - -
Bach4g01505 401 MobiDBLite consensus disorder prediction 220 255 - -
Bach4g01505 401 Gene3D - 267 332 IPR036353 GO:0003684|GO:0006289|GO:0043161
Bach4g01505 401 Gene3D - 1 80 - -
Bach4g01505 401 FunFam UV excision repair protein RAD23 1 80 - -
Bach4g01505 401 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 162 205 IPR015940 -
Bach4g01505 401 Pfam UBA/TS-N domain 357 392 IPR015940 -
Bach4g01505 401 Pfam UBA/TS-N domain 164 202 IPR015940 -
Bach4g01505 401 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 390 - -
Bach4g01505 401 PRINTS DNA repair protein Rad23 signature 351 367 IPR004806 GO:0006289
Bach4g01505 401 PRINTS DNA repair protein Rad23 signature 302 324 IPR004806 GO:0006289
Bach4g01505 401 PRINTS DNA repair protein Rad23 signature 368 382 IPR004806 GO:0006289
Bach4g01505 401 PRINTS DNA repair protein Rad23 signature 383 398 IPR004806 GO:0006289
Bach4g01505 401 SUPERFAMILY UBA-like 338 399 IPR009060 GO:0005515
Bach4g01505 401 NCBIfam UV excision repair protein Rad23 1 400 IPR004806 GO:0006289
Bach4g01505 401 MobiDBLite consensus disorder prediction 79 97 - -
Bach4g01505 401 SMART uba_6 164 204 IPR015940 -
Bach4g01505 401 SMART uba_6 357 394 IPR015940 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach4g01505 Bach-Chr4 11089964 11094543 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach4g01505 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 37.838 1.48e-08 51.2