Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach4g01240 ATGGCAAAAATTAGCATTACCTTGCCTGCTTTCTTATTCTTGTCCTGTTTGGTTGCCACCCTGCATGCCAGTAAGTTGGAAAGGGAGGAATCTTGGAAAGAGCAAGGTAAATCATTTGATGTGTATTGGAAGCAAAGAGCAAAGACTGCGGAAGAGGCCAATAAAAAAGCAGCTGTTACCGACCCTTATGAAGTCACTGCTAACATCTCCTCTAATATTAACGAGATCCTAATAAGTGGCGCGACGAGGGGTGGAAGGATGTTGTTGAGGGGGAAAAAATCTACAGGTCCATGTCAGGCCTTCAACCCCATTGACAGGTGCTGGAGGTGTGACCCCAACTGGGCTAAACGCCGCAAGAGGCTCGCAAAATGCGCTAAGGGCTTTGGCAGGAAAACCACAGGTGGAAAGGGTGGAAAAATCTATGTTGTGACTGATCCCTCAGACAATGACATGGTGAATCCTAAACCAGGCACCCTTCGTCACGCAGTTATACAAACTGAGCCGTTGTGGATCATCTTTGCTCGAAGCATGGTGATTGAGCTGCAGCAGGAGCTTATAATGGCTTCTAACAAAACCATTGATGGTAGAGGTGCCAATGTTCACATTGCTGGTGGTGCTGGTATTACCATCCAGTTCATAGAGAATGTGATCGTCCATGGGATTCATATTCATGACATTAGACCTAAAAATGGTGGACTTATTAGAGATTCTGTTGACCATTTTGGTTTGAGGACTAGGAGTGACGGTGATGCAATTTCCATCTTTGGCTCCAACCGTATTTGGATTGACCATTGCTCATTGTCCAAGGCCACAGATGGACTAATCGATGCAATTATGGGATCCACTGCTATTACCATCTCCAACAACCAATTCGCAAAACATAAGGAGGTGATGCTGTTTGGTGCCAGCGACAACCATGCCGAAGATGACATCATGCAAGTGACAGTGGCATTCAACAACTTTGGTAAGGGATTAGTCCAAAGGATGCCAAGGTGTAGAAGGGGTTTCTTCCATGTGGTTAATAATTACTACACTCATTGGCAAAAGTATGCCCTTGGCGGTAGCATGCATCCTACCATTATTAGTGAAGGAAACAGATACATTGCCCCGGACAACATATTTCTCAAAGAGGTATGCTCTTCAAAATCTAATGATGTCACAATGAGAGTCCTTACACCAAAGAGCGAGTGGGAAAAATGGCAATGGAGATCAATAAATGATGAATTCCTCAATGGTGCAATTTTCACACAATCTGGGCCTGAGGTGATCGACCAGAAATCAAAATATGCTCTGGATATGATCGTTGCTCATCCTGTGACATGGGTGGATAGACTCACTCGCGATGCTGGCACCCTCTCATGCAAAGTTGGTAAGCCTTGTTAG 1383 0.449 MAKISITLPAFLFLSCLVATLHASKLEREESWKEQGKSFDVYWKQRAKTAEEANKKAAVTDPYEVTANISSNINEILISGATRGGRMLLRGKKSTGPCQAFNPIDRCWRCDPNWAKRRKRLAKCAKGFGRKTTGGKGGKIYVVTDPSDNDMVNPKPGTLRHAVIQTEPLWIIFARSMVIELQQELIMASNKTIDGRGANVHIAGGAGITIQFIENVIVHGIHIHDIRPKNGGLIRDSVDHFGLRTRSDGDAISIFGSNRIWIDHCSLSKATDGLIDAIMGSTAITISNNQFAKHKEVMLFGASDNHAEDDIMQVTVAFNNFGKGLVQRMPRCRRGFFHVVNNYYTHWQKYALGGSMHPTIISEGNRYIAPDNIFLKEVCSSKSNDVTMRVLTPKSEWEKWQWRSINDEFLNGAIFTQSGPEVIDQKSKYALDMIVAHPVTWVDRLTRDAGTLSCKVGKPC 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach4g01240 460 PRINTS Pollen allergen Amb family signature 431 454 IPR018082 -
Bach4g01240 460 PRINTS Pollen allergen Amb family signature 148 173 IPR018082 -
Bach4g01240 460 PRINTS Pollen allergen Amb family signature 328 347 IPR018082 -
Bach4g01240 460 PRINTS Pollen allergen Amb family signature 350 369 IPR018082 -
Bach4g01240 460 PRINTS Pollen allergen Amb family signature 124 141 IPR018082 -
Bach4g01240 460 PRINTS Pollen allergen Amb family signature 184 200 IPR018082 -
Bach4g01240 460 PRINTS Pollen allergen Amb family signature 248 269 IPR018082 -
Bach4g01240 460 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 16 - -
Bach4g01240 460 PANTHER PECTATE LYASE 18-RELATED 53 458 IPR045032 GO:0030570
Bach4g01240 460 SUPERFAMILY Pectin lyase-like 93 453 IPR011050 -
Bach4g01240 460 SMART amb_all 176 373 IPR002022 -
Bach4g01240 460 Pfam Pectate lyase 185 366 IPR002022 -
Bach4g01240 460 Gene3D - 101 453 IPR012334 -
Bach4g01240 460 Pfam Pectate lyase, N terminus 38 75 IPR007524 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach4g01240 Bach-Chr4 8636560 8638741 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach4g01240 39 460 Polysaccharide Lyase AT1G14420 55.069 2.35e-167 477
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach4g01240 K01728 - gmx:100810857 534.643