Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bach4g01146 | ATGTCTCGGGTTTATGTTGGGAATTTGGATCCTCGAGTTTCGGAGAGGGATCTCGAAGATGAATTTCGGATGTTCGGTGTTCTCCGGAGCGTCTGGGTTGCTCGAAGACCACCAGGATATGCATTTCTTGAGTTTGATGATCGGAGGGATGCCCTTGATGCAGTTCATGCTTTGGATGGCAAGAATGGTTGGCGTGTAGAGCTTTCTCGTAATTCCAAGGGTGGTGGTGGCCGTGGTGGACGTGGGCGTGGAGGTGAGGACTTGAAATGTTATGAGTGTGGTGAACCTGGTCATTTTGCCAGAGAGTGCCGTTTACGAATTGGTTCACGAGGCTCAGGAAGTGGACGACGACGAAGCCCTAGTCCTTATCGACGCCGTGGAAGTCCAAGTTATGGGTATGGCCGCAGGAGTTATAGTCCACGTGGAAGAAGATCTCCAAGACGAATTAGCATATCACCTCGACGCCGCAGCATTAGCAGGTCCCCTCCACGCCGCCATTCTCGCCGTGACTCACCTTATGCCAATGGAGATTAACGTCAGAATGTGAATGGAACAAATGCTGGATGACCTTCAAGGGTGGCTCTCTGCTGTTGTAATGTAGTTCCTATAGGATTGGTTGAGCAAACAACAAACATGTTAGTTTTGT | 646 | 0.5 | MSRVYVGNLDPRVSERDLEDEFRMFGVLRSVWVARRPPGYAFLEFDDRRDALDAVHALDGKNGWRVELSRNSKGGGGRGGRGRGGEDLKCYECGEPGHFARECRLRIGSRGSGSGRRRSPSPYRRRGSPSYGYGRRSYSPRGRRSPRRISISPRRRSISRSPPRRHSRRDSPYANGD | 177 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bach4g01146 | 177 | CDD | RRM_SRSF3_like | 3 | 71 | - | - | |
Bach4g01146 | 177 | SUPERFAMILY | Retrovirus zinc finger-like domains | 79 | 106 | IPR036875 | GO:0003676|GO:0008270 | |
Bach4g01146 | 177 | MobiDBLite | consensus disorder prediction | 67 | 87 | - | - | |
Bach4g01146 | 177 | SMART | rrm1_1 | 3 | 69 | IPR000504 | GO:0003723 | |
Bach4g01146 | 177 | ProSiteProfiles | Zinc finger CCHC-type profile. | 89 | 104 | IPR001878 | GO:0003676|GO:0008270 | |
Bach4g01146 | 177 | Gene3D | - | 77 | 148 | - | - | |
Bach4g01146 | 177 | MobiDBLite | consensus disorder prediction | 108 | 177 | - | - | |
Bach4g01146 | 177 | SMART | c2hcfinal6 | 89 | 105 | IPR001878 | GO:0003676|GO:0008270 | |
Bach4g01146 | 177 | FunFam | Serine/arginine-rich splicing factor 7 | 2 | 69 | - | - | |
Bach4g01146 | 177 | MobiDBLite | consensus disorder prediction | 140 | 163 | - | - | |
Bach4g01146 | 177 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 4 | 61 | IPR000504 | GO:0003723 | |
Bach4g01146 | 177 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 2 | 73 | IPR000504 | GO:0003723 | |
Bach4g01146 | 177 | Pfam | Zinc knuckle | 89 | 104 | IPR001878 | GO:0003676|GO:0008270 | |
Bach4g01146 | 177 | Gene3D | - | 2 | 70 | IPR012677 | - | |
Bach4g01146 | 177 | PANTHER | SERINE/ARGININE RICH SPLICING FACTOR | 2 | 165 | - | - | |
Bach4g01146 | 177 | SUPERFAMILY | RNA-binding domain, RBD | 3 | 84 | IPR035979 | GO:0003676 | |
Bach4g01146 | 177 | FunFam | Serine/arginine-rich splicing factor RSZ21A isoform C | 77 | 150 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Bach4g01146 | Bach-Chr4 | 7896311 | 7898420 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Bach4g01146 | 2 | 59 | Eukaryotic Initiation Factors Gene Family | AT1G22760 | 40.323 | 3.25e-06 | 44.7 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bach4g01146 | K12896 | - | cit:102606665 | 201.445 |