Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach4g01027 ATGGCACTGCGTGGGGGTGTTGGCTATCCTGTAACTGAACCCTTTAGGGGTCACCCAAAAAATGTTAGTCTTGCTTTGGCATCTATCAAAAACCCTAAAGCTGAAAGAATGGGAAGAGGGAAGATCGTGATTCGGAGGATCGACAATTCTACCAGTAGGCAGGTGACTTTCTCAAAGAGAAGAAAGGGATTGATCAAGAAAGCTAAAGAGTTGGCAATCCTGTGTGATGCAGAAATTGGACTTGTGATATTTTCAAGTACTGGAAAGCTGAATGAATATGCAAGCACCAGTATGAAATCTGTGACTGAGAGATATAACACATACAAGGAGGAACATCAACAACTGACGAATCCAGAATCAGAAGTCAAGATTTGGCGAAGGGAGGCAGAAATATTAAGACAGCAACTACAGGGTCTACAAGAAAACCATCGGCAGTTGATGGGACAACAGCTTTATGGTTTGAGTGTAAGAAACCTACAAGACCTCGAGAATCAACTGGAAATGAGTCTCCAAGGTGTCCGCATGAAAAAGGAACAAATTCTAACAGATGAAATCCAAGAGCTGACCCAGAAGGGAAATCTTACCCATCAGGAAAATGTGGAACTCTATAAGAAGGTCAACCTCATTCGACAAGAAAACATGCAACTACACAAGAAGGTTTATGGCACAACAGATGTGACTGCAGCAAGTAGAAATGCATTTGTTCCATATGGTATCCATGGAGAAAAGGATTCAAACGCGCAGATCCAGCTTCAGCTATCTCAGCCAGAACAACATGAATATGAGACATCAGGCAGTGCCACAAAATGAAGGTCAAATGTTATTTCCCTAACATTAGTAAGATACAACATTGAATCAAACAGATTTATGAAATTGAAGCAAAATTACCACATAGAAGGGCGCTGGAGGATGAATTTTACTCACTTCACACAACAAAACAAGAATCTTAGAAGAAAAAATGTGTTTCTTGAAGTGAGATGAGCTGGATAAAAGTTTATCAGTACAATAACGACAATGGAACACAAGATATGTATGTAACGTGGCATATGGGAAGTTTGAATAATATAGCAAGCACACATTATTTTCCAACATCTGTAACCAATTATTTTTTGGAGAT 1117 0.3957 MALRGGVGYPVTEPFRGHPKNVSLALASIKNPKAERMGRGKIVIRRIDNSTSRQVTFSKRRKGLIKKAKELAILCDAEIGLVIFSSTGKLNEYASTSMKSVTERYNTYKEEHQQLTNPESEVKIWRREAEILRQQLQGLQENHRQLMGQQLYGLSVRNLQDLENQLEMSLQGVRMKKEQILTDEIQELTQKGNLTHQENVELYKKVNLIRQENMQLHKKVYGTTDVTAASRNAFVPYGIHGEKDSNAQIQLQLSQPEQHEYETSGSATK 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach4g01027 269 ProSiteProfiles MADS-box domain profile. 37 97 IPR002100 GO:0003677|GO:0046983
Bach4g01027 269 CDD MADS_MEF2_like 38 114 IPR033896 GO:0000977|GO:0045944
Bach4g01027 269 ProSiteProfiles K-box domain profile. 122 212 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bach4g01027 269 Coils Coil 159 179 - -
Bach4g01027 269 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 46 93 IPR002100 GO:0003677|GO:0046983
Bach4g01027 269 Gene3D - 49 129 IPR036879 GO:0003677|GO:0046983
Bach4g01027 269 Pfam K-box region 118 206 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bach4g01027 269 Coils Coil 122 149 - -
Bach4g01027 269 SUPERFAMILY SRF-like 38 127 IPR036879 GO:0003677|GO:0046983
Bach4g01027 269 ProSitePatterns MADS-box domain signature. 39 93 IPR002100 GO:0003677|GO:0046983
Bach4g01027 269 PANTHER SERUM RESPONSE FACTOR HOMOLOG 37 234 - -
Bach4g01027 269 PRINTS MADS domain signature 39 59 IPR002100 GO:0003677|GO:0046983
Bach4g01027 269 PRINTS MADS domain signature 59 74 IPR002100 GO:0003677|GO:0046983
Bach4g01027 269 PRINTS MADS domain signature 74 95 IPR002100 GO:0003677|GO:0046983
Bach4g01027 269 SMART madsneu2 37 96 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach4g01027 Bach-Chr4 6918941 6927959 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach4g01027 37 267 MADS-box Gene Family AT2G22630 62.771 5.30e-100 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Bach4g01027 K-box 7e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach4g01027 K09264 - qsa:O6P43_025186 366.696