Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach4g00988 TTTTCTCTAGGTCTGTGTTTAGGGTTTCAAGGACCTACTGGTTCATAGTATTTCGATTTCTTCATTCCGATCAAAAATGGGGAAAAAGAAACTGAAGGAACCACAAGAAACTCCCGAAGTTAACGGTATTTCGGATTCTTCTGGTATATTTAACACCTTGTTTGGTGAGGTACCGGAACAGCACACCTCTGGTTCTCTATTCTCAGATAAAAACCCCTTTCGGAGGAAGCCTCAAGAATCTGGTTCAGGTCTCGACTCAACTAAGGATACTGAAAGCTCTAGTCTTGGCGGCGCCGGGAACCACGGCTCTGGTGAGCTGACGAAGAGGAAGAGGAAAAAAGAGAAAAACTCCATTGTTGATTCGGGTTCCGCCTTTGAAGTGTCGGATAAGAAACGAAAACCTGGTTCCGATGTAAGCCCTCATCAGGGTCATCAACCAGATAGGAATGCGGAGGATAGCGAGGCCAAAGACGCTGATTTGGGTGCACAGGGAATTGCATTGTCAAAGAAAAAGAAGGTTAAAACACGGGAAATGGTTTCTCAGTTAAATAACGTGTCAAATATTGGTGAGGGGGAAGATCTTGATTCGGGTTTGCAGTCGAATGGAAGATATGAGGTTGTGAATGAAGACAAGGAGAAGACGAAAAAGAAAAGAAAGAGGGATGAACTTGAGAAGGACTATGAGGCAAGGAAGTATGGAGCAGTTGAAGAAGAGGAAGATGGAGGTGAAGGCTTAGGAAACAAGACTGTTGGAAGCAAGAGGAAGACAGTGGATAATCCAGCTGATATGCTGGTTCCCAATGAAGGTTTTGATGACGAGAATAAGCTTTTGAGAACTATTTTTGTTGGGAATTTGCCACTTAAGACGAAAAAGAAGAGTTTAATGAAGGAGTTTAAAAATTTTGGGGAGATAGAATCTGTGAGGATTCGTTCTGTGCCAATATTGGATACCAAAAAACCTAGAAAGGGAGCTATTCTATTGAAGAAAATCAATGATGCTGCTGCTGATAGTGTTCATGCGTACATTGTTTTTAAAACAGAGGAATCTGCGCAGGCTTCTTTGTCGCATAACATGGCCATGGTTGGAGAAAATCACATTCGTGTTGACAGGGCATGCCCACCACGCAAAAAACTTAAAGGGGATAGTGCTCCACTTTATGATAACAAGAGAACTGTATTTGTGGGCAACCTCCCATTTGACGTAAAAGATGAAGAAGTATATCAGTTATTTTCTGGTTTAGCAAACCTGGAATACAGTATAGAAGCTATTAGAGTCGTTAGAGATCCTCATATTAATCTAGGAAAGGGCATCGCTTATGTGCTGTTTAAAACCAGGGAAGCTGCTAACTCTGTAGTAAAGAAACGGAACTTGAAGCTCCGAGACCGAGAGCTTAGACTATCTCATGCCCGAGCAGATGTTACCCCATCTAAAAGACCCAACTCATCATCAGCAGAAGGTCCTAATACCCCGGCGAAGAAGCTTGCTATGTCTTCAACTTCGAGGTCTCCTTCAAGCAGTAATAACAAAAACAGAAAAACCATGTCCTACCAGGGTGTGGTAGCTTCAAGGTCTCCTTCGAGTAGTAATAAGAAGGCAAATATGAAACCAACTATGTCTTATCAGGGTTTACGTGCAACGAAGACTGGTGCTAACAGGAGCAGCTTTAACACTCAGAGTGGAGGGCAACCAACAGAGCGTAAGAAGAAGAGACCATCAGTTGCTGCTAGAAAGGCCGGGGCAAAATCGCTTAAGGATGTTGTTCCATTGAAACAAGCTGGGATCAAACGCAAGCTTGATAGAAGAACTCCAGATAACTCCCAACGAAATAAGAAGAAAGTTAAGAGGAATAGGTAGCATGTTGTGTTAGCTGGTAGAGAATATGTATACTCGTTGAGATGAGTTCTCACTTGTCTTTGATTGCTGTCATAA 1930 0.4259 MGKKKLKEPQETPEVNGISDSSGIFNTLFGEVPEQHTSGSLFSDKNPFRRKPQESGSGLDSTKDTESSSLGGAGNHGSGELTKRKRKKEKNSIVDSGSAFEVSDKKRKPGSDVSPHQGHQPDRNAEDSEAKDADLGAQGIALSKKKKVKTREMVSQLNNVSNIGEGEDLDSGLQSNGRYEVVNEDKEKTKKKRKRDELEKDYEARKYGAVEEEEDGGEGLGNKTVGSKRKTVDNPADMLVPNEGFDDENKLLRTIFVGNLPLKTKKKSLMKEFKNFGEIESVRIRSVPILDTKKPRKGAILLKKINDAAADSVHAYIVFKTEESAQASLSHNMAMVGENHIRVDRACPPRKKLKGDSAPLYDNKRTVFVGNLPFDVKDEEVYQLFSGLANLEYSIEAIRVVRDPHINLGKGIAYVLFKTREAANSVVKKRNLKLRDRELRLSHARADVTPSKRPNSSSAEGPNTPAKKLAMSSTSRSPSSSNNKNRKTMSYQGVVASRSPSSSNKKANMKPTMSYQGLRATKTGANRSSFNTQSGGQPTERKKKRPSVAARKAGAKSLKDVVPLKQAGIKRKLDRRTPDNSQRNKKKVKRNR 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach4g00988 592 MobiDBLite consensus disorder prediction 443 592 - -
Bach4g00988 592 SUPERFAMILY RNA-binding domain, RBD 246 354 IPR035979 GO:0003676
Bach4g00988 592 CDD RRM2_RBM34 366 442 IPR034221 -
Bach4g00988 592 Gene3D - 357 452 IPR012677 -
Bach4g00988 592 MobiDBLite consensus disorder prediction 58 75 - -
Bach4g00988 592 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 365 446 IPR000504 GO:0003723
Bach4g00988 592 MobiDBLite consensus disorder prediction 449 537 - -
Bach4g00988 592 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 367 439 IPR000504 GO:0003723
Bach4g00988 592 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 255 297 IPR000504 GO:0003723
Bach4g00988 592 Gene3D - 171 356 IPR012677 -
Bach4g00988 592 MobiDBLite consensus disorder prediction 153 169 - -
Bach4g00988 592 SUPERFAMILY RNA-binding domain, RBD 360 458 IPR035979 GO:0003676
Bach4g00988 592 MobiDBLite consensus disorder prediction 79 133 - -
Bach4g00988 592 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 344 513 - -
Bach4g00988 592 SMART rrm1_1 366 442 IPR000504 GO:0003723
Bach4g00988 592 SMART rrm1_1 254 344 IPR000504 GO:0003723
Bach4g00988 592 CDD RRM1_RBM34 253 344 - -
Bach4g00988 592 MobiDBLite consensus disorder prediction 1 235 - -
Bach4g00988 592 MobiDBLite consensus disorder prediction 14 44 - -
Bach4g00988 592 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 253 348 IPR000504 GO:0003723
Bach4g00988 592 MobiDBLite consensus disorder prediction 565 581 - -
Bach4g00988 592 Coils Coil 181 201 - -
Bach4g00988 592 MobiDBLite consensus disorder prediction 180 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach4g00988 Bach-Chr4 6632553 6635579 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach4g00988 255 445 Eukaryotic Initiation Factors Gene Family AT1G22760 25.128 2.03e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach4g00988 K14837 - qsa:O6P43_033336 603.208