Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach4g00827 ATGATCCTTCCAGTCTTAGCGTCAACGTCGAGCACAGTGGTCCTTTTGGATCCAAGTGTAACTGCTCCACCATCTGCTATGGTAGGTGTTGCTTTTACAAAATCTGCAACTGATGTTGAGAGTCTCTGCAGAAACAGTAAACCAATCAGCAGGGACATCAAAAGCGGAAGCGAGACTTGGGAGTTCCCTGATTCCGATACATCACCGTTTAAGCTCGAAAACAGTGCGATTAGCAATATCAAAGCGCTTGAAACTCTAAGAAACAGGTTCAGTTTTTCAACCATGTTCTTTGCCCACAGGGAAAATACAGTGAGAACTCTTGCTCGCTTGGTGCTGCTTATATGGTTATTTGTAGTTCTTATAATTAACTCAAGTTACACAGCAAGCTTGACCTCAATCCTCACGGTGCAACAGCTTGTTTCCCTTAGTGAAGGCATCGAAAGTTTAATTAGTAGCAAAGACCGAATTGGCTACCTGCAAGGTTCTTTTACCAGAGATTATTTGATTGAGGAAGTAGGTATTCATGAATCCAGACTTGTTCCCCTAAAGACACCAGAAGAGACTGCTAAAGCATTGAAAGATGGTTCTGGTAATGGTGGTGTTGCTGCATATATTGATGAGCGTGCATACATAGAGCTCTTCCTTTCAAGTGAGTGTGATTTTACTATTGTAGGTCAAGAGTTCACGAGAAACGGTTGGGGATTCGCATTTCCAAGAGATTCCCCATTATCGATTGACATGTCGACTGCAATTCTGGAATTGGCCGAGAATGGAGATCTGCAAAGGATCCATGACAAATGGCTTTTGAGCAGTGCTTGCCTATCTCAAGGTGCAAAGCTTGAATACAAGAAGCACCACTCAGAAGAAGAATTTTCTAGTCCAAGCCAACGAAGCTCAGGATCTTCATGCGTTCGGACATTCCTTTCATTTGCTGACGAAAAAGCAGAAGATGTTGAGAGCCGCTCTAAGAGAAGGCAAATGGAGAGGATCTCCTACAGGAGCAGCGATAGTGGATTAAACTCAGCCATGGACTCCAGTAAAGGATATTCTCAATCATCAGCTTCAAACAGAAGCCCAGATTGTGGTAATGAAGCAGGACCAACTGTTGCCTATTCCTTCTACACAATTTTATAG 1134 0.4312 MILPVLASTSSTVVLLDPSVTAPPSAMVGVAFTKSATDVESLCRNSKPISRDIKSGSETWEFPDSDTSPFKLENSAISNIKALETLRNRFSFSTMFFAHRENTVRTLARLVLLIWLFVVLIINSSYTASLTSILTVQQLVSLSEGIESLISSKDRIGYLQGSFTRDYLIEEVGIHESRLVPLKTPEETAKALKDGSGNGGVAAYIDERAYIELFLSSECDFTIVGQEFTRNGWGFAFPRDSPLSIDMSTAILELAENGDLQRIHDKWLLSSACLSQGAKLEYKKHHSEEEFSSPSQRSSGSSCVRTFLSFADEKAEDVESRSKRRQMERISYRSSDSGLNSAMDSSKGYSQSSASNRSPDCGNEAGPTVAYSFYTIL 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach4g00827 377 SMART GluR_14 59 270 IPR001320 GO:0015276|GO:0016020
Bach4g00827 377 Gene3D - 198 231 - -
Bach4g00827 377 MobiDBLite consensus disorder prediction 332 362 - -
Bach4g00827 377 Pfam Bacterial extracellular solute-binding proteins, family 3 133 268 IPR001638 -
Bach4g00827 377 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 86 275 IPR015683 -
Bach4g00827 377 SUPERFAMILY Periplasmic binding protein-like II 126 268 - -
Bach4g00827 377 Pfam Ligand-gated ion channel 89 277 IPR001320 GO:0015276|GO:0016020
Bach4g00827 377 FunFam Glutamate receptor 165 272 - -
Bach4g00827 377 Gene3D - 50 167 - -
Bach4g00827 377 Gene3D - 232 267 - -
Bach4g00827 377 MobiDBLite consensus disorder prediction 318 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach4g00827 Bach-Chr4 5492749 5495923 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach4g00827 90 335 Ion Channels AT3G51480 57.295 7.88e-99 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach4g00827 K05387 - gmx:100788917 360.533