Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach4g00628 ATGGCGTCAAAGAAGGAAGCTAAGAAGGAGGAATCTGCAGAGTCGCCAACTTCGGTGCTTGAAGATGAGGATACTTGCGGGGTCAAAGTTGAAGTCAAGTCAGAGGAAGAGTTGCTTGCAGATGTTAAAAATGAAGACTCCTCACCTATATCAAGAGCAATGGCTGAAGAGGAAGAGAAGCTGCAGGAAGCTCGGATCAAGGAAGAAGAGGAAGAGCGTAAACAGGAGCCAGAGGAGGCACCGAACTTGAATCACACTCAGTTTACCAGATTGGATGAACTTTTAACACAAACTCAACTCTACTCAGAATTTCTACTGGAGAAAATGGATGACATCACACTTAATGGTGGGGAACAAGAGTATGAACCAGCTGGGAAAAAGAAGGGCCGTGGTTCAAAAAGAAAAGCCACCTCACAGTACAATAATAGAAAGGCCTCAAAAGCAGTTGCTGCGATGCTTACAAGATCTAAAGAAAATGAGAAGACTGAAGATACGAACTTGAGTGAGGAAGAAAGAATTGAGATAGAGCAGAAAGAGCTTATACCATTGTTGACAGGTGGAAAGTTGAAGCCTTATCAACTGAAGGGTGTAAAGTGGTTGATTTCATTGTGGCAAAATGGATTGAATGGGATTCTTGCTGATCAAATGGGTCTTGGGAAGACAATCCAGACTATTGGTTTCCTTTCACATCTAAAAGGGAAAGGTCTGGATGGGCCATACTTGATAATTGCTCCTCTTTCAACTCTTTCAAATTGGGAGAATGAGATTTCTAGGTTTGCACCGTCACTATCTGCTATTATCTACCATGGTAGCAAGAAGGAAAGGGATGAAATTCGAAGAAAACATATGCCAAGAACAATAGGCCCAAAATTTCCCATAGTGGTTACCTCTTATGAGGTTGCGTTAAATGATACTAGGAGATACTTCAAATCATACCATTGGAAATATGTTGTTATTGATGAGGGGCACAGGCTCAAGAACTCAAATTGCAAATTAGTGAAGATGTTGAAATTCCTAAGTGTAGAAAATAAGCTTCTATTAACTGGGACACCTCTTCAAAATAACTTGGCTGAGCTATGGTCGTTGTTAAACTTCATTTTACCAGACATTTTCTCATCCCTTGCAGAATTTGAGTCATGGTTCAATTTGTCTGGAAAGTGCAATAATGGAGCAACAGAGGAGGACCTGGAAGAGAAAAGAAGAGCGGAAGTAGTAGCAAAGCTCCATGCAATATTGCGCCCTTTTATTCTGCGTAGGATGAAGGCTGATGTTGAGCAGATGTTGCCAAGAAAGAAGGAGATCATTTTATATGCAAATATGACTGAATATCAGAAGAATTTTCAGGATCATTTGGTTAATAGAACATTGGAGAACTATTTGCAAGAAAAATCCGCAACTGGGCATGCTACAAAGAGGCTTAATAATTTGGTTATTCAGCTTAGGAAGAACTGTAACCATCCTGACCTCTTAGAGTCGGCCTTTGATGGTTCATTCGACTATCCTCCGGTCAATGAGATAGTTGAACAATGTGGAAAATTCCGTTTGCTGGACCGCTTGTTGGCACGGTTATTTGACCGGCAGCACAAGGTCTTGATCTTCAGTCAATGGACAAAAGTGTTGGATATTATGGATTATTATTTCTCTGAAAAGGGCTTTGAAGTTTGCAGAATTGATGGTAGTGTGAGACTGGATGAAAGGAAAAGGCAGCAGATCAAGGAGTTCAATGATGTAGACAGCAATTATAGAATCTTTCTTCTTAGTACTAGGGCTGGTGGATTGGGAATTAACCTCACTGCAGCTGACACCTGTATTCTTTATGACAGTGATTGGAATCCTCAAATGGATTTACAGGCTATGGATAGATGTCATAGGATAGGTCAAACAAAACCTGTTCATGTTTACAGGCTTGCAACTGCTCAATCTGTGGAGGGTCGCATGCTGAAAAGAGCTTTTAGTAAGTTAAAGCTCGAGCATCTGGTGATTGGAAAAGGGCAGTTCCATCAAGAAAGAACAAAGCCCAACAATGTGAATGCCCTAGAGGAAGAAGATCTGTTGGCATTGCTTCGAGAGGAAGAATCTGTTGAAGACAAGATGATACAGACAGATATTAGTGATGTCGACTTGCAAAAGTTATTGGATCGCAGTGATCTTACTGCTGATGGTCCAGTCAGTGCAGTTCCTCTTACAGGGCCTGGGTGGGAGGTGGTTATTTCGGCAACTGGCAGCATGCTTTCTACTCTGAACAGCTAA 2250 0.4142 MASKKEAKKEESAESPTSVLEDEDTCGVKVEVKSEEELLADVKNEDSSPISRAMAEEEEKLQEARIKEEEEERKQEPEEAPNLNHTQFTRLDELLTQTQLYSEFLLEKMDDITLNGGEQEYEPAGKKKGRGSKRKATSQYNNRKASKAVAAMLTRSKENEKTEDTNLSEEERIEIEQKELIPLLTGGKLKPYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFLSHLKGKGLDGPYLIIAPLSTLSNWENEISRFAPSLSAIIYHGSKKERDEIRRKHMPRTIGPKFPIVVTSYEVALNDTRRYFKSYHWKYVVIDEGHRLKNSNCKLVKMLKFLSVENKLLLTGTPLQNNLAELWSLLNFILPDIFSSLAEFESWFNLSGKCNNGATEEDLEEKRRAEVVAKLHAILRPFILRRMKADVEQMLPRKKEIILYANMTEYQKNFQDHLVNRTLENYLQEKSATGHATKRLNNLVIQLRKNCNHPDLLESAFDGSFDYPPVNEIVEQCGKFRLLDRLLARLFDRQHKVLIFSQWTKVLDIMDYYFSEKGFEVCRIDGSVRLDERKRQQIKEFNDVDSNYRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSVEGRMLKRAFSKLKLEHLVIGKGQFHQERTKPNNVNALEEEDLLALLREEESVEDKMIQTDISDVDLQKLLDRSDLTADGPVSAVPLTGPGWEVVISATGSMLSTLNS 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach4g00628 749 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 421 710 IPR027417 -
Bach4g00628 749 MobiDBLite consensus disorder prediction 116 141 - -
Bach4g00628 749 SMART helicmild6 541 626 IPR001650 -
Bach4g00628 749 MobiDBLite consensus disorder prediction 1 27 - -
Bach4g00628 749 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 201 369 IPR014001 -
Bach4g00628 749 Gene3D - 425 721 IPR027417 -
Bach4g00628 749 Pfam Helicase conserved C-terminal domain 514 626 IPR001650 -
Bach4g00628 749 Coils Coil 50 74 - -
Bach4g00628 749 Coils Coil 159 179 - -
Bach4g00628 749 Gene3D - 190 420 IPR038718 -
Bach4g00628 749 FunFam ATP-dependent DNA helicase DDM1 183 428 - -
Bach4g00628 749 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 161 419 IPR027417 -
Bach4g00628 749 PANTHER SNF2/RAD54 HELICASE FAMILY 7 698 - -
Bach4g00628 749 CDD SF2_C_SNF 501 636 - -
Bach4g00628 749 MobiDBLite consensus disorder prediction 1 16 - -
Bach4g00628 749 MobiDBLite consensus disorder prediction 39 89 - -
Bach4g00628 749 Pfam SNF2-related domain 192 489 IPR000330 GO:0005524|GO:0140658
Bach4g00628 749 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 515 677 IPR001650 -
Bach4g00628 749 MobiDBLite consensus disorder prediction 50 80 - -
Bach4g00628 749 SMART ultradead3 185 380 IPR014001 -
Bach4g00628 749 FunFam Chromatin complex subunit A 106 429 657 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach4g00628 Bach-Chr4 4186455 4191846 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach4g00628 177 647 RAD5 or RAD16-like Gene Family AT3G16600 25.043 5.51e-33 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Bach4g00628 SNF2_N 1.2e-66 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach4g00628 K19001 - cave:132188478 1121.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bach4g00628 4 4186455 4191846 Bach4g00628 4 4186455 4191846 ECH