Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach4g00592 ATGACCCTTTACGCCTCAAGCCTTAGTGCCTACAATTTGAATGCGATAGATAATTGCTGGAGATGGAACCCTGAATGGCGAAGACATCGCCAACAACTTGCCACCTGCTCTGTTGGGTACGCAGGCAAGATGAGCAACAACATTGGAAAAGGACTCATCCACTATAAGGTTACTGATCCCAGTGACGACCCAATTAACCCAAAACCAGGCACCTTGAGATATGGAGCAAGTGTGATTCAAGGTAAGGTGTGGATCACATTCCAAAGAGACATGCATATTAAGCTCCAGAGAGCCCTCCTCATTAGCAGCTTCACCACCCTCGATGGCAGAGGCGTCAACGTTCACATTGCTGATAATGCATGCTTGTTGATCTTTAAGGCAAGCAACATAATCATCCATGGCCTTAGGATTCATCATTGCAGGCCTCAAGCCCCAGGCATGGTGATGGGTCCTGAAGGGAAGGTGATTCCAATAGGTCACGTAGATGGAGACGCAATCAGATTGGTTACGGCTTCAAAGATTTGGATTGACCACAATACCCTCCACGATTGCCAAGATGGTCTTCTCGACGTCACTCGTGGCTCCACCGATGTGACCATCTCCAACAACTGGTTCAGAGAGCAGAACAAGGTTATGCTTCTTGGGCACGATGATGGTTACATCAGAGACCGGAACATGAAGGTCACCGTTGTCTTCAACCACTTTGGGCCTCAGTGCAGCCAGCGCATGCCCAGGATCCGCTATGGGTATGCACATGTTGCCAACAATCTGTACTTGGGATGGGTGCAATACGCCCTTGGTGGAAGCAAGGCACCCAGCCTCAAAAGCGAAGCCAACCTCTTCATAGCACCAAAATATGGTAGTAAAGAGGTGACATGGAGAAAAGGCAATCCGTCAGATAATGTGGAGAAATGGGAATTTTATTCGGTGGGGGACGTTTTTGAGAACGGGGCCTCCTTCTGTGAAACAAAATCTGTTGGGGCGAAGCCCAATTATAACAAGGAGCAGATATTTCAAGTGGCGGATGCCAGATATGTGAGGTCATTAACAAGCTCTTCAGGCGTATTACGTTGCAGTAGGACCTCTAGATGCTGA 1095 0.4831 MTLYASSLSAYNLNAIDNCWRWNPEWRRHRQQLATCSVGYAGKMSNNIGKGLIHYKVTDPSDDPINPKPGTLRYGASVIQGKVWITFQRDMHIKLQRALLISSFTTLDGRGVNVHIADNACLLIFKASNIIIHGLRIHHCRPQAPGMVMGPEGKVIPIGHVDGDAIRLVTASKIWIDHNTLHDCQDGLLDVTRGSTDVTISNNWFREQNKVMLLGHDDGYIRDRNMKVTVVFNHFGPQCSQRMPRIRYGYAHVANNLYLGWVQYALGGSKAPSLKSEANLFIAPKYGSKEVTWRKGNPSDNVEKWEFYSVGDVFENGASFCETKSVGAKPNYNKEQIFQVADARYVRSLTSSSGVLRCSRTSRC 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach4g00592 364 PANTHER PECTATE LYASE 18-RELATED 12 361 IPR045032 GO:0030570
Bach4g00592 364 Gene3D - 13 357 IPR012334 -
Bach4g00592 364 Pfam Pectate lyase 101 281 IPR002022 -
Bach4g00592 364 SUPERFAMILY Pectin lyase-like 49 360 IPR011050 -
Bach4g00592 364 PRINTS Pollen allergen Amb family signature 61 86 IPR018082 -
Bach4g00592 364 PRINTS Pollen allergen Amb family signature 335 358 IPR018082 -
Bach4g00592 364 PRINTS Pollen allergen Amb family signature 98 114 IPR018082 -
Bach4g00592 364 PRINTS Pollen allergen Amb family signature 242 261 IPR018082 -
Bach4g00592 364 PRINTS Pollen allergen Amb family signature 305 329 IPR018082 -
Bach4g00592 364 PRINTS Pollen allergen Amb family signature 162 183 IPR018082 -
Bach4g00592 364 PRINTS Pollen allergen Amb family signature 264 283 IPR018082 -
Bach4g00592 364 SMART amb_all 90 287 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach4g00592 Bach-Chr4 3989795 3991097 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach4g00592 44 296 Polysaccharide Lyase AT5G09280 69.565 6.96e-142 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach4g00592 K01728 - gmx:100780437 607.446
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bach4g00592 4 3989795 3991097 Bach4g00592 4 3989795 3991097 ECH