Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach4g00195 ATTTTTTCCAGTGTTTACCTAAAAAAGAAAAGAGATCAGGTTTTTTTTATCTTACTTACCCTTTTCTACTTAATTTGCAATGGAGTTCTAGATTGAAACAGAATAACTCCGTTGATGATAAGTAGTTTGAAGGGGCAACCAATCAATCAATCAATCATCCTCTCTCATTTTTCCATTTTATTTGCTTCTAGGAAAAAATTTTCCTTTTAGGGTTTCTGAGAACCTGCAGTCACTTTCTTGGACTCTCTTGAGTTTATCAAAAATTTCCCTTTCTATTGTTCGGATTCGTGATTGTTTTTGGCAAGTTTAACTAATTTGGTTTCTGTTTTACTTTTAAAAACCATTTCTAAGCTTTGGCCGGCCACTTGTGTTTTGAAATCCTTTGATTAATTAGCTAGCAAGCTAGATCTCACTGTGTCAATTTCAGTTGAGATCGTTTCACAGAGAATCTAGTCTAGCTGTCGTTTTTGAGGAATTTATATATTGTTCTCTCGGTTTTGGGTTAGGGCGGAGGGAGGGGTTCTGCAGTGAGGATGGTGAGAGGAAAAACTCAAATGAAGCGCATAGAAAATGACACAAGCAGGCAAGTAACCTTCTCAAAGAGAAGAAATGGGCTGCTGAAGAAGGCATTCGAGCTTTCGGTGCTGTGTGATGCTGAAGTTGCACTCATCATATTCTCTCCCAGAGGGAAGCTCTATGAGTTCTCCAGTTCTAGTATAAGCAAAACGATAGAACGCTATCAAAAGAAAGTCAAGGATCTGGATCTCAGCAATAAAGAAATCCAAGAAAATATGCAGCATGTGAAGGAAGATGCTATCAGCATTGCGAAAAAGCTCGACCATCTTGAAGTTTCAAAGCGGAAGCTTTTGGGAGATGGTTTGGATTCAAGCTCTATCGAAGAGTTACATCAGTTAGAAAACCAACTGGAACGGAGTCTAAACAGAATTAGAGCAAGAAAGAATCAATTGTCAAGGGAGCAAATTGAGAAACTAAGGGAAAAGGAGAAGTGCCTACAGGAAGAAAATAACAAGTTATGGGAGCAGTATCGGTTTGAACAAGAGAGGCTTTCAAGAAGACAACAGGATATGGAATTGGTGAAAGAAAGGACAAGGGAGGAGGTGGAGACGGGGTTGTTCATTGGGCCACCAGAGAGACGATGAATTCCTTGAAATTAATTAAACACAAGGACATTTTAGTTTTCAAGTTAATAATGTTAATGTAGACTCACCCACACCACATCGATCCTGGCTTAAGTTCGTGATCGTGCATGGGGGGTGTGAACAGAAATGATTATAGAAGCTATATATATTAGTTATTAATACAGTACTGTGTGGAAATTTGTATGTGTGTAAGTTTGATTAGAAGCTATATATGTACCTAGTCTGTGAACTCTGCTTTGACGTTA 1405 0.3836 MVRGKTQMKRIENDTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSSSISKTIERYQKKVKDLDLSNKEIQENMQHVKEDAISIAKKLDHLEVSKRKLLGDGLDSSSIEELHQLENQLERSLNRIRARKNQLSREQIEKLREKEKCLQEENNKLWEQYRFEQERLSRRQQDMELVKERTREEVETGLFIGPPERR 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach4g00195 208 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bach4g00195 208 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bach4g00195 208 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bach4g00195 208 Pfam K-box region 85 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bach4g00195 208 SUPERFAMILY SRF-like 3 73 IPR036879 GO:0003677|GO:0046983
Bach4g00195 208 ProSiteProfiles K-box domain profile. 87 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bach4g00195 208 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 165 - -
Bach4g00195 208 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bach4g00195 208 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bach4g00195 208 FunFam MADS-box protein SOC1 14 95 - -
Bach4g00195 208 Coils Coil 66 93 - -
Bach4g00195 208 Gene3D - 13 95 IPR036879 GO:0003677|GO:0046983
Bach4g00195 208 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bach4g00195 208 CDD MADS_MEF2_like 3 71 IPR033896 GO:0000977|GO:0045944
Bach4g00195 208 Coils Coil 121 170 - -
Bach4g00195 208 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach4g00195 Bach-Chr4 1299631 1304792 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach4g00195 1 208 MADS-box Gene Family AT4G22950 61.137 9.89e-81 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Bach4g00195 K-box 3e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach4g00195 - - gmx:100805260 287.73