Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bach4g00172 | ATGGTTCTCAAAACTGAACTTTGTCGCTTCAGCGGTGCCAAGATATACCCTGGTAAGGGTATCAGATTTATTCGCTCAGATTCCCAGGTTTTCCTCTTCGCAAATTCAAAATGCAAGAGGTATTTTCATAATCGTCTGAAGCCATCAAAGCTCAGCTGGACAGCGATGTATAGGAAGCAACATAAGAAGGACCTTGCTGCTGAAGCTGTGAAGAAGAAGCGTCGAACCACAAAGAAACCTTATTCAAGGTCGATTGTTGGTGCCACCTTGGAAGTAATACAAAAGAGACGAACTGAAAAACCAGAGGTCCGAGATGCTGCACGTGAGGCTGCACTTCGCGAAATTAAAGAAAGAATCAAGAAAACCAAGGATGAAAAGAAGGCAAAGAAAGCGGAATTGGCGGCCAAGACACAGAAGACGCATACCAAGGGAGTTCCCAAGGGGGCTGGACCAAAGGGTCCCAAACTTGGAGGTGGTGGTGGAAAGCGATGATTACCCCCCTTTTTCTATCATCCAGTTTTCAAATACACAAACTGTTATACTCTTTCACTTTGTTTAAGTATGGATTAGCAATCACTGTTAGTGTTGGCCATTGACATATTACTGCTGTATTTGAGCATTTGGGATTTGCCGTAGCATTTTTGGAAACAAAGAAATTT | 659 | 0.431 | MVLKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLSWTAMYRKQHKKDLAAEAVKKKRRTTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKDEKKAKKAELAAKTQKTHTKGVPKGAGPKGPKLGGGGGKR | 163 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bach4g00172 | 163 | Gene3D | - | 69 | 143 | - | - | |
| Bach4g00172 | 163 | MobiDBLite | consensus disorder prediction | 118 | 137 | - | - | |
| Bach4g00172 | 163 | PANTHER | 60S RIBOSOMAL PROTEIN L24 | 4 | 139 | IPR000988 | - | |
| Bach4g00172 | 163 | Pfam | Ribosomal protein L24e | 4 | 67 | IPR000988 | - | |
| Bach4g00172 | 163 | CDD | Ribosomal_L24e_L24 | 3 | 56 | IPR000988 | - | |
| Bach4g00172 | 163 | Gene3D | Ribosomal protein L24e | 3 | 64 | IPR038630 | - | |
| Bach4g00172 | 163 | ProSitePatterns | Ribosomal protein L24e signature. | 10 | 27 | IPR023442 | - | |
| Bach4g00172 | 163 | Coils | Coil | 112 | 139 | - | - | |
| Bach4g00172 | 163 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 6 | 58 | - | - | |
| Bach4g00172 | 163 | FunFam | 60S ribosomal protein L24 | 3 | 64 | - | - | |
| Bach4g00172 | 163 | MobiDBLite | consensus disorder prediction | 118 | 163 | - | - | |
| Bach4g00172 | 163 | SMART | 4TRASH | 8 | 46 | IPR011017 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Bach4g00172 | Bach-Chr4 | 1141194 | 1143189 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Bach4g00172 | 1 | 156 | Cytoplasmic Ribosomal Protein Gene Family | AT2G36620 | 83.439 | 6.70e-85 | 244 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bach4g00172 | K02896 | - | pop:7479265 | 232.646 |