Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach4g00127 ATGGGTCGTGCAAGATTGCCCGTGAAATTTATCCAAACAGAGAAACGCCGTAGGGCGACTTTTAACAAGAGACCGAAGGGATTAAAGAATAAATGTTATGAACTTTGGACTCTTTGCGGTGTTGATGCTACCATGATATTCTATGCCTATGGCCCAGAACCTGAGATTTGGCCTGAAGACCCCAGAGAGCTAAGACGTATTATTGAAAGATGCTAG 216 0.4352 MGRARLPVKFIQTEKRRRATFNKRPKGLKNKCYELWTLCGVDATMIFYAYGPEPEIWPEDPRELRRIIERC 71
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach4g00127 71 Gene3D - 13 71 IPR036879 GO:0003677|GO:0046983
Bach4g00127 71 SMART madsneu2 1 59 IPR002100 GO:0003677|GO:0046983
Bach4g00127 71 SUPERFAMILY SRF-like 2 70 IPR036879 GO:0003677|GO:0046983
Bach4g00127 71 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bach4g00127 71 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bach4g00127 71 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 48 IPR002100 GO:0003677|GO:0046983
Bach4g00127 71 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach4g00127 Bach-Chr4 864464 864679 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach4g00127 1 69 Type I MADS-box Gene Family AT3G05860 41.429 4.07e-15 65.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Bach4g00127 SRF-TF 1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach4g00127 - - ncol:116265591 89.7373