Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach3g02482 ATGGATGGAGAAAGAGATAAAGGAAAAGGAGGAGGTGAAACAATGGAGGGAGGAAATGAGTTGAATGAGGAAATTGATTTGGTGGAAGAAATACAGGGCGTAATTGAAGCGGTGGCTCAATTTGGGGATTACCGAAGGACCCAAAGGAAAGAATGTCACAGCCTTGTTAGGCGTTTGAAACTATTGTTGCCTCTTATCGAAGAAACTCGGGATCTAGATTCACCAATTCCAGAGAAGGGCATGGCGTGGTTGTGTAATCTGAAGGATGCAGTACTTTTGGCCAAGAAACTGTTGCAATTGTGTAACGAGGGGAGCAAAATTTACCTGGCAATCGAGAGCGAGGCGGTCATGATCAAATTTCAGTCCGTCTATGAAGAATTGAGCAAAGCGTTTGATGCTTGTCCTTGTGAAGAGCTAGGGATCTCAGACGAAGTGAAAGAACAGCTTGAGCTAATGTGCGTGCAACTCAGGCGGGCGAAGAGGCGAACGGATAGTCAGGACATAGAACTTGTAATGGATACGATGGTGGTATTCTCGAAAAAGGATGATCGGAATGCTGACAGTGCTATCATAGAAAGGCTAGCTAAAAAGCTGGATCTTTATACTGTCGAGGATCTCAATATAGAAACGGTGGGTGTAAGGAAGCTTGCTAAAGAAAGAAAAGGGCAAAATGCAGAGTGTACCCAGCAAATAATTTCCCTTCTTAACAAATTCAAACGGATTGCTGGCATGGAAGAAACCAATGTTCTTGATGATCCTGCCATGCCCAGAACACTTGAGAAGTGCACATCTTTGGTCATTCCTCACGAATTTCTCTGCCCAATTACACTAGAAATAATGACAGATCCTGTTATTGTTGCAAGTGGACAGACTTATGAACGGGAAAGCATAGAGAAGTGGTTCGCGTCCAATCACAAGACCTGCCCAAAGACTAGACAAACTCTGGCTCACCTGTCATTAGCACCAAACTATGCCCTGAAAAATTTGATCTCCCAGTGGTGTGAGAAAAACAACTTTCAACTAGCTAAAAAGGACACTGGTTCAGCTAAAGAAAGCTGTTTCATCGAAAACAAGGAGGAACTACCGTCCTTGGTTGAGGATCTTTCGTCTATCCATTTAGAAGTGCAAAGAAAGGCAGTGCAGAAGATACGTCTGATATCCAAGGAGAATTCTGAGAACAGAGTGTTGATTGCTGAGCTAGGAGGAATACCGCCGCTAGTGCAACTCCTTTCATATCCAGATTCCAAAATACAGGCGCATGCAGTGACTGCTCTTTTAAATTTATCTATTGATGAGAATAACAAGCGACTCATATCAAGAGAAGGGGCTATTCAAGCTATAATAGAAGTACTGGAGAATGGGAGTACCGAGGGAAGAGAAAATTCTGCAGCTGCTTTATTTAGCTTGTCAATGCTGGACGAGAATAAAGAAGTTGTGGGTTTATCAAATGGCATTCGCCCTTTGGTAAAATTGTTGCAGGAAGGGACAATTAGAGGTAAAAAAGATGCTGCTACAGCTCTCTTTAACTTGTCTTTCAACCACGCAAATAAAAGAAGGGCCATTGAAGCTGGTATTATGACCCCCTTGCTTCAATTGCTCAGGGATAAAAACTTGGGCATGATTGATGAAGCCCTTTCCATCCTATTACTGCTTGCTTCTAATCCAGACGGAAGGCGTGAGATTGGACAACTCACCTTCATTGAAAATCTTGTTGATTTCATTCGGGATGGAACTCCCAAGAATAAGGAATGTGCAGCATCTGTTCTACTTGAATTGGCTTCCAGTAATTCATCCTTTATGCTCGCAGCACTTCAGTTTGGAGTATATGAGCATTTAATTGAGATCAAAGAAAATGGAACAAATAGAGCACAAAGGAAAGCAGAGGCACTCTTAGATCTCGTAAGCAAGAGCGAGCTAATTTAA 1923 0.4254 MDGERDKGKGGGETMEGGNELNEEIDLVEEIQGVIEAVAQFGDYRRTQRKECHSLVRRLKLLLPLIEETRDLDSPIPEKGMAWLCNLKDAVLLAKKLLQLCNEGSKIYLAIESEAVMIKFQSVYEELSKAFDACPCEELGISDEVKEQLELMCVQLRRAKRRTDSQDIELVMDTMVVFSKKDDRNADSAIIERLAKKLDLYTVEDLNIETVGVRKLAKERKGQNAECTQQIISLLNKFKRIAGMEETNVLDDPAMPRTLEKCTSLVIPHEFLCPITLEIMTDPVIVASGQTYERESIEKWFASNHKTCPKTRQTLAHLSLAPNYALKNLISQWCEKNNFQLAKKDTGSAKESCFIENKEELPSLVEDLSSIHLEVQRKAVQKIRLISKENSENRVLIAELGGIPPLVQLLSYPDSKIQAHAVTALLNLSIDENNKRLISREGAIQAIIEVLENGSTEGRENSAAALFSLSMLDENKEVVGLSNGIRPLVKLLQEGTIRGKKDAATALFNLSFNHANKRRAIEAGIMTPLLQLLRDKNLGMIDEALSILLLLASNPDGRREIGQLTFIENLVDFIRDGTPKNKECAASVLLELASSNSSFMLAALQFGVYEHLIEIKENGTNRAQRKAEALLDLVSKSELI 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach3g02482 640 Gene3D - 341 638 IPR011989 -
Bach3g02482 640 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 442 484 IPR000225 GO:0005515
Bach3g02482 640 ProSiteProfiles U-box domain profile. 266 340 IPR003613 GO:0004842|GO:0016567
Bach3g02482 640 CDD RING-Ubox_PUB 268 320 IPR045210 -
Bach3g02482 640 Pfam U-box domain 267 337 IPR003613 GO:0004842|GO:0016567
Bach3g02482 640 Gene3D - 22 134 IPR036537 GO:0007166
Bach3g02482 640 SMART Ubox_2 270 333 IPR003613 GO:0004842|GO:0016567
Bach3g02482 640 FunFam RING-type E3 ubiquitin transferase 24 137 - -
Bach3g02482 640 PANTHER U BOX DOMAIN-CONTAINING 49 633 - -
Bach3g02482 640 FunFam RING-type E3 ubiquitin transferase 345 639 - -
Bach3g02482 640 Pfam Armadillo/beta-catenin-like repeat 390 429 IPR000225 GO:0005515
Bach3g02482 640 Pfam Armadillo/beta-catenin-like repeat 473 511 IPR000225 GO:0005515
Bach3g02482 640 FunFam RING-type E3 ubiquitin transferase 266 341 - -
Bach3g02482 640 SUPERFAMILY ARM repeat 360 629 IPR016024 -
Bach3g02482 640 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 401 443 IPR000225 GO:0005515
Bach3g02482 640 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 267 340 IPR013083 -
Bach3g02482 640 SMART arm_5 513 553 IPR000225 GO:0005515
Bach3g02482 640 SMART arm_5 472 512 IPR000225 GO:0005515
Bach3g02482 640 SMART arm_5 431 471 IPR000225 GO:0005515
Bach3g02482 640 SMART arm_5 390 430 IPR000225 GO:0005515
Bach3g02482 640 SMART arm_5 554 594 IPR000225 GO:0005515
Bach3g02482 640 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 483 525 IPR000225 GO:0005515
Bach3g02482 640 SUPERFAMILY RING/U-box 266 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach3g02482 Bach-Chr3 30849133 30851651 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach3g02482 27 640 U-box Gene Family AT5G42340 63.681 0.0 751
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach3g02482 - - gmx:100777362 910.983