Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach3g02454 ATGTCGCTGGTGGCTAAAAACAAGGATTGGAACGGCGCGGAGGCAAAGCATTATCCTTCCCCACTTGCGTCTCACGAGGACGTGGTCAGCGACCCTACTGTTTTCTGGGACACTCTCAGGCGCTTTCACTTTGTTATGGGCACCAAATTCATGATTCCTGTAATCGGAGGAAAGGAACTGGAGTTGCACGTTCTTTACGTGGAGGTTACTAGAAGGAGTGGTTATGAGAAGGTAGTTGCAGAGAAGAAATGGAGGGAAGTGAGTAATGTATTCAGATTCTCTCCTACAACTACCAGTGCTTCTTATGTATTGAGGAAGCACTACTTCAATCTTCTATACCATTACGAGCAAGTTTACTTCTTTAAGGTTCGGGGTCCAGTGTGTACTCCATCAGATGCATTTTCTGTTGGTAACCAGTCATGGAGACCTGAATTAGCTATTGTGGAATATTCGCATAAGCCCATGAATAAGCAACCTGATTCCCATTTTGCTGTACTTATTACTGATGCAGATACTTCTTCCTTTTCTGCAATTGGAACAATCGAGGGGAAATTTGATTGTGGTTATTTGGTGTCTGTGAAACTGGGTTCGGAGGTTCTTAGAGGTGTGCTTTATCATCCGGAGCAATCAGATCCCTCATCATCGATTTCGCAATATAGTGGTGCCATTGTACCTTACAATCGCAAATCTCGACGTAGGCGGAGGAGAAACAGAAGAAGGGGGGACCCTAACTACCCGAAGCCAAATAGAAGTGGGTATAATTTTTTCTTTGCTGAAAAACATTATAAGCTCAAAGCCCTGTACCCAAACAGAGAAAGGGAGTTTACCAAAATGATTGGCCAGTCATGGAACGGTCTTAGTCCAGAGGAGAGAATGGTTTACCAGAACATTGGCTTGAGAGACAAGGAAAGGTACAGGAGAGAATTGAGGGAGTACAAAGAGAGAATGAAGCTTAGGCCGACCGAAGAACTTGGGCATTGA 981 0.4434 MSLVAKNKDWNGAEAKHYPSPLASHEDVVSDPTVFWDTLRRFHFVMGTKFMIPVIGGKELELHVLYVEVTRRSGYEKVVAEKKWREVSNVFRFSPTTTSASYVLRKHYFNLLYHYEQVYFFKVRGPVCTPSDAFSVGNQSWRPELAIVEYSHKPMNKQPDSHFAVLITDADTSSFSAIGTIEGKFDCGYLVSVKLGSEVLRGVLYHPEQSDPSSSISQYSGAIVPYNRKSRRRRRRNRRRGDPNYPKPNRSGYNFFFAEKHYKLKALYPNREREFTKMIGQSWNGLSPEERMVYQNIGLRDKERYRRELREYKERMKLRPTEELGH 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach3g02454 326 CDD ARID_HMGB9-like 31 116 IPR045303 GO:0003677
Bach3g02454 326 Gene3D - 21 125 IPR036431 GO:0003677
Bach3g02454 326 MobiDBLite consensus disorder prediction 227 249 - -
Bach3g02454 326 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 6 318 - -
Bach3g02454 326 Pfam HMG (high mobility group) box 246 313 IPR009071 -
Bach3g02454 326 SUPERFAMILY HMG-box 243 316 IPR036910 -
Bach3g02454 326 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 246 313 IPR009071 -
Bach3g02454 326 Gene3D High mobility group box domain 229 322 IPR036910 -
Bach3g02454 326 SMART bright_3 30 121 IPR001606 GO:0003677
Bach3g02454 326 SUPERFAMILY ARID-like 24 123 IPR036431 GO:0003677
Bach3g02454 326 ProSiteProfiles ARID domain profile. 29 120 IPR001606 GO:0003677
Bach3g02454 326 CDD HMG-box_AtHMGB9-like 246 312 - -
Bach3g02454 326 SMART ARID_2 26 116 - -
Bach3g02454 326 SMART hmgende2 245 314 IPR009071 -
Bach3g02454 326 MobiDBLite consensus disorder prediction 227 241 - -
Bach3g02454 326 Pfam ARID/BRIGHT DNA binding domain 35 116 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach3g02454 Bach-Chr3 30665288 30667463 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach3g02454 13 319 ARID Transcription Factor Family AT1G76110 66.139 2.12e-138 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Bach3g02454 ARID 7.8e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach3g02454 - - jre:108984522 460.685