Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach3g02423 ATGGGTATTTTCAGTGTCATAACGAGTTTTTTGGGATTTGGAGTAGGCACTTCACTGGGGCTGGTGATTGGGTACTATCTGTTCATATATTTCCAGCCAACAGATGTCAAGGATCCCATTATTCGTCCTTTGGTTGAACAAGATTCAGAAAGTCTGCAACGGTTTCTTCCAGAGATACCCTTGTGGGTTAAAAATCCAGACTATGATCGTCTTGACTGGCTTAATAAATTTATTGAGAATATGTGGCCTTATCTGGACAAGGCAATTTGCACGACTGCAAGGACTATAGCAAAGCCAATAATTGCAGAGCAAATACCAAAATATAAGATTGATTCAGTTGAATTTGAAGCACTTACCTTGGGTTCTTTACCGCCAACTTTTCAGGGAATGAAGGTCTATACCACTGATGAAAAGGAGTTAATTATGGAACCATCAGTGAAATGGGCGGGGAATCCTAACATCATAGTTGCAGTAAAAGCATTCGGGTTGCGAGCCACAGTCCAGGTGGTTGATCTGCAAGTATTTGCTGCTCCACGTATCACTCTGAAGCCTCTAGTTCCAAGCTTTCCTTGTTTTGCCAACATACATGTGTCTCTCATGGAGAAGCCGCATGTTGATTTTGGACTAAAACTACTTGGAGCTGATGCAATGTCTATTCCTGGCCTTTATAGGTTTGCCCAGGAGCTTATTAAGGAACAGGTTGCAAAGATGTATCTATGGCCCAAGGCCTTGGAGGTGCAGATAATGGATCCAACAAAGGCCATGAAATTACCTGTCGGAATTCTCCAAGTGAAGGTTCTAAGGGCAATGAAGCTTAGAAAGAAAGATTTCATGGGGGCATCTGATCCTTATGTGAAACTCAAACTCACAGAGGATAAACTCCCTTCAAAGAAGACAACTGTTAAATACGGCAATTTGAATCCAGAATGGAATGAGGAATTTCATCTGGTGGTCAAAGACCCAGCATCTCAAGCCTTAGAACTGAATGTCTATGACTGGGAGAAGATCTTTGGCATGCATGAGAAGATGGGTATGAATGTCATTCCGTTGAAAGAGCTTATTTCTGATGAACCTAAAGTAATGGCTCTTGATTTACTCAAGACTTTGGACCCAAATGATGTTGAGAATGAGAAGTCACGTGGGCAGCTCGAAGTGGAAGTGTTATATAAGCCTTTTAAGGAGGATGAATTACCTGGGAATTTAGAAGACTCCAATGCAATAGAAAAGGCTCCTGAAGGAACACCTGCTAGTGGTGGTTTGCTTGTAATTATCATCCATGAAGCCGAAGATGTAGAAGGGAAACACCACACGAATCCATATGCACGATTACTTTTCAGAGGAGAGGACAGGAAGACCAAGCATGTTAAGAAAAACAGAGATCCAAGGTGGGAAGAAGAGTTTCAGTTCATGCTGGAGGAACCCCCCACCAAAGACAAGCTTTATGTTGAAGTGCTAAGTTCCTCTTCAAAATTGGGCATCCTGCATCCTAAGGAAACTCTGGGATACGTGGAAGTAAGTCTAGCTGATGTCGTTACCAACCAAAGAATCAACGAGAAATATGCTCTTATCGACTCAAGAAATGGCCGCATTCAAATTGAGCTGCAGTGGAGAACTCCTTGATGATGGCAATACAGTACTAGTTCACATCCGGTGTGCATAGTTTTGTAAAGTATTCTCTCTCCTATTGACCTCCTTATATATATATATATATATATATATATTTCAGCACTCTCAAACTTGTTAGATGTGTCTAACACATATAATAAAGAGGATAGTTTGTT 1781 0.4121 MGIFSVITSFLGFGVGTSLGLVIGYYLFIYFQPTDVKDPIIRPLVEQDSESLQRFLPEIPLWVKNPDYDRLDWLNKFIENMWPYLDKAICTTARTIAKPIIAEQIPKYKIDSVEFEALTLGSLPPTFQGMKVYTTDEKELIMEPSVKWAGNPNIIVAVKAFGLRATVQVVDLQVFAAPRITLKPLVPSFPCFANIHVSLMEKPHVDFGLKLLGADAMSIPGLYRFAQELIKEQVAKMYLWPKALEVQIMDPTKAMKLPVGILQVKVLRAMKLRKKDFMGASDPYVKLKLTEDKLPSKKTTVKYGNLNPEWNEEFHLVVKDPASQALELNVYDWEKIFGMHEKMGMNVIPLKELISDEPKVMALDLLKTLDPNDVENEKSRGQLEVEVLYKPFKEDELPGNLEDSNAIEKAPEGTPASGGLLVIIIHEAEDVEGKHHTNPYARLLFRGEDRKTKHVKKNRDPRWEEEFQFMLEEPPTKDKLYVEVLSSSSKLGILHPKETLGYVEVSLADVVTNQRINEKYALIDSRNGRIQIELQWRTP 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach3g02423 539 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 255 393 IPR035892 -
Bach3g02423 539 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 67 249 IPR031468 GO:0008289
Bach3g02423 539 Gene3D C2 domain 258 412 IPR035892 -
Bach3g02423 539 CDD SMP_SYT 60 248 - -
Bach3g02423 539 ProSiteProfiles C2 domain profile. 403 520 IPR000008 -
Bach3g02423 539 FunFam Synaptotagmin-2 isoform A 255 411 - -
Bach3g02423 539 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 9 536 IPR045050 GO:0008289
Bach3g02423 539 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 67 246 IPR039010 -
Bach3g02423 539 Pfam C2 domain 420 521 IPR000008 -
Bach3g02423 539 Pfam C2 domain 260 359 IPR000008 -
Bach3g02423 539 Gene3D C2 domain 420 538 IPR035892 -
Bach3g02423 539 SMART C2_3c 261 362 IPR000008 -
Bach3g02423 539 SMART C2_3c 420 519 IPR000008 -
Bach3g02423 539 CDD C2 262 365 - -
Bach3g02423 539 PRINTS C2 domain signature 304 317 IPR000008 -
Bach3g02423 539 PRINTS C2 domain signature 326 334 IPR000008 -
Bach3g02423 539 PRINTS C2 domain signature 277 289 IPR000008 -
Bach3g02423 539 ProSiteProfiles C2 domain profile. 240 363 IPR000008 -
Bach3g02423 539 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 419 537 IPR035892 -
Bach3g02423 539 FunFam Extended synaptotagmin-2 420 538 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach3g02423 Bach-Chr3 30479452 30483391 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach3g02423 259 355 C2H2 Transcription Factor Family AT4G05330 39.796 5.36e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach3g02423 - - gmx:100820475 946.806