Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach3g02000 TTCAATTTGTTTCTTGTTTGGATAAGAAGTTTTAGACCTTCACCCTTGTGGCTGTGGGGCAAGGGTGGTCAAAGGCCTGAACAACGCTCTAAAGAAGCTCTTGGGCTAGAGTTGGGAAAACAAGAGAAAAAATTGGATTATGAGTAGCCTGGTTGAGAGGCTTCGTGTAAGATCATCAGATCGCAAGCCAGTCTACAATTTAGATGATTCGGATGACGATGCTGACTTTTTGCCTCGTAAGCACGGGGCAACTGAGGAAAAGTTTGAGAGGATAGTTAGAAGTGACGCGAAAGAGAATGCATGTCAAGCTTGTGGAGAAAGTGGAAATCTTCTGAGCTGTGAAACCTGTTCTTATGCTTACCATCCTAGATGTTTACTCCCACCTCTTAAAAATCCCCTTCCAGACAACTGGAGGTGCCCTGAATGTGTTAGCCCACTTAATGATATTGATAAGATATTAGATACTGAAATGCACCCTACTGTTGCTGGTGACAGCGATGCAACAAAACTGGGGTCAAAGCAAATTTTTGTCAAACAATATCTTGTTAAGTGGAAGGGACTATCTTATCTACACTGTACTTGGGTGCCAGAGAAAGATTTCCTGAAAGCTTTCAAGACACATCCTCGTCTAAAGACTAAAGTAAACAACTTTAATCGTCAAAAGGCTTCACTCAATACATCTGAGGAAGACTTTGTTGCCATCCGACCTGAATGGACTACTGTTGATCGTATACTTGCTTGCAGGGGTGACAGTGATGACAAGGAATATCTTGTGAAATGGAAAGAGCTTTTATATGATGAATGTTATTGGGAGTTTGAGTCAGATATTTCTGCATTTCAGCCAGAAATAGAAAGATTCTATAGATTTCAGTCTAGGTCTCGGAAACATTCTTCCAGTAAGCAGAAAAGCTGTATCAAGGATGGTGCTAACTCAAAGAAGCGGCAAAAAGAATTTCAACAGTATGAACATAGCCCAGAGTTCCTTTCAGGCGGCAAAACCATCCAAAGCATTGCTTTTTTGGCATCCCTTTTTGAAGAGAATGTTTCTCCACATCTGGTGGTTGCCCCACTTTCAACACTTAGAAACTGGGAACGTGAATTTGCAACATGGGCTCCTCAGTTGAATGTGGTTATGTATGTTGGAACTGCCCAAGCTCGTTCTGTTATAAGAGAGTACGAATTTTATTTTCCAAAGAGCCACAAAAAGATCAAGAAAAAGAAATCTGGTCAAATAGTCAGTGAAAGCAAGCAAGATAGGATCAAATTTGATGTTCTTTTGACATCATATGAGATGATCAACTTGGACACTGCATCATTGAAGCCTATAAAGTGGGAGTGCATGATAGTTGATGAAGGTCATCGTCTCAAAAATAAGGATTCAAAATTATTTTCTTCAATGAAGCAGTATTCCAGTAGACATCGCGTGCTTTTGACTGGGACTCCTCTTCAGAACAATTTAGATGAACTTTTTATGCTTATGCACTTCCTAGATGCTGGAAAGTTTGGAAGTTTAGAGGAGTTTCAGGAAGAGTTCAAGGATATCAATCAAGAGGAACAGATTTCGAGGCTTCACAAAATGTTGGCACCGCACCTCCTTAGAAGAGTAAAGAAAGATGTCATGAAGGAACTTCCTCCTAAAAAGGAACTTATTTTACGTGTTGAATTAAGCAGTAAACAAAAAGAATACTATAAGGCAATTTTGACCCGTAATTATCAGATATTAACTCGCCGTGGTGGTCCACAGATTTCTCTTATTAACGTTGTTATGGAGTTGAGGAAACTCTGTTGCCATCCTTACATGTTAGAAGGAGTTGAACCAGATATTGAAGATGTAAAAGAATCAAATAAACAGTTATTGGAATCATCGGGAAAGTTGCAATTGTTGGACAAAATGATGGTGAAGCTTAAAGAGCAGGGACATAGGGTACTCATTTATTCACAATTTCAGCGCATGTTGGACTTGCTTGAAGATTACTGTACTTATAAGAATTGGCATTACGAAAGGATAGATGGAAAAGTTGGTGGAGCTGAAAGACAAGTACGGATAGATCGGTTTAATGCTAAAAATTCTTCAAGATTTTGTTTTCTTCTTTCTACTAGAGCTGGGGGATTGGGGATAAACCTTGCGACAGCTGACACTGTGATTATATATGATAGCGATTGGAATCCTCATGCTGATCTGCAAGCTATGGCCAGAGCTCATCGACTTGGACAGACAAATAAGGTGATGATTTTTAGACTCATAACACGAGGAACCATTGAAGAAAGAATGATGCAGATGACTAAGAAAAAAATGGTGTTAGAACATTTAGTTGTTGGGAGGCTGAAGGCTCAAAATATTAATCAGGAAGAGTTAGATGACATCATAAGGTATGGGTCAAAGGGGTTATTTGCTGATGAGAATGATGAAACTGGAAAATCCCGCCAAATTCATTATGATGATGCAGCCATTGATAGATTACTGGATCGTGAACAAGTTGGAGATGAAGAAGCTACCTTAGATGATGAGGATGAAGATGGATTTCTGAAGGCCTTCAAGGTGGCAAATTTTGAATATATTGATGAAGTTGAGGCTGCAGCGGAAGAGGTGGCAGCAAAAAAAAGAGCAATGGAGAATAAACCTACTGTGACCCCCGCAGATCGATCAACGTACTGGGAGGAGTTACTAAAAGACAGATTTGAAGTGCATAAACATGAAGAGTTCAATTCCATGGGCAAAGGGAAGAGAACCCGCAAGATGATAAGTTCTGTTGAGGAGGATGATCTTGCTGGTCTGGAAGATATAAGTTCTGAAGGGGAAGATGACAGTTATGAAGCTGATCTTACTGACGGTGATTCAAATTCAACTGGAAATGCTTCAACTAGAAGGCCATACAGAAAGAAAGCCCGTGTTGCAGATAGCACAGAACCCCTTCCTCTGATGGAAGGCGAAGGAAAATCTTTCAGAATACTCGGATTCAATCAAAGTCAGCGGGCAGCATTTGTGCAAATTTTGATGAGGTTTGGGGTTGGTGATTTTGATTGGAAGGAGTTTACTTCCCGCTTGAAGCAGAAGACCTATGAAGAAATCAAAGATTACGGAACCCTGTTTTTGTCTCACATCGCTGAGGATATTACAGATGCCCCTACGTTCTCAGATGGTGTTCCTAAAGAAGGGCTTCGTATACAAGATGTCCTAGTCAGGATTGCCATTCTTCTCTTGATAAGAGACAAAGTGAAGTTTGCAACCGAAATTCTTGGCACTCCACTTTTTTCAGATGACATTTTCTTCCGCTATCCAGGTTTGAAGAGTGCAAAGTTATGGAAGGAGGAGCATGATTTAGTGTTACTGCGTGCCTTGTTGAAGCATGGGTATGGAAGGTGGCAAGCTATTGTCGACGATAAGGATCTGAAGATTCAGGAAGTCATCTGTCAGGAGTTGAATCTTCCCTTTATAAATTTACCTGTATCTGGACAAGTTGGACCTCAGGTGCAAAACGGTGCAAATTTGACTAATACAGAAGCACCCAACAACCAAACTGGGGAAAATGGTGACAATGACGTAGCAACTGACAATGCGCATGGTTCTGGTGATGCTAGGAACCCAGGACAGTTATATCAAGAGTCCATATTATACCATTTCAGAGACATGCAGAGAAGACAGGTCGAGTTTATAAAAAAGCGGGTGCTACTCGTGGAAAAAGGGCTCAATGCTGAGTACCAGAAAGAATACTTTGGTGAGTCGAACGCAAATGAAACTAATGAAGAACTTAAAAGTGAACCTAAGGCTACAAGTGTGCTAAACTATCAATCAGGGGAGACTGACTCCCAAACGAGTGATCGTTTGCCTCGAGTAGAAGCAATAGCTTCGGAAGAAATTTCAGTTGTTGCTTGTGATAATGATTCAGACCGATTGGAATTGATTCGTCTTTATAACGAGTTGTGCAAGGTTATGGAGGAGAATGTCATGGAATCAGATCAAACAGCTTTGGCAAGAGAACCTGTAGAAGTTAAAGTGCTTAACAACTTCCTTCCGCTAGAAACCATTTTTAAAGACATAAACAGGATTTTAACTCCTGCTCAACAAAATTTGGAGAAAAAATCAGAGGATTTAACACATGTTCTTATTGGGGGCTCCACATCTTCGTCTATCCATCAAGATGACTGCAAACCTGATACTACGGTACACAATGAGAGCAAAGATGATATGGTAATAGATTCTGAAGTTAAAAGAGAAAGCAACCCTGACCTGGTACAAGAGAAGAATAACATACCAAGTATTCCTGAGGCGAGGGGAGGTGATATAGAAATGGGTCACGAAACTAAGAACGATGCTCAGTTAAATCAAGAGACGGAAAAATCCGGGCCTGGTGTCATTGTATTGGATGATTAA 4372 0.4048 MSSLVERLRVRSSDRKPVYNLDDSDDDADFLPRKHGATEEKFERIVRSDAKENACQACGESGNLLSCETCSYAYHPRCLLPPLKNPLPDNWRCPECVSPLNDIDKILDTEMHPTVAGDSDATKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKDFLKAFKTHPRLKTKVNNFNRQKASLNTSEEDFVAIRPEWTTVDRILACRGDSDDKEYLVKWKELLYDECYWEFESDISAFQPEIERFYRFQSRSRKHSSSKQKSCIKDGANSKKRQKEFQQYEHSPEFLSGGKTIQSIAFLASLFEENVSPHLVVAPLSTLRNWEREFATWAPQLNVVMYVGTAQARSVIREYEFYFPKSHKKIKKKKSGQIVSESKQDRIKFDVLLTSYEMINLDTASLKPIKWECMIVDEGHRLKNKDSKLFSSMKQYSSRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHKMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGPQISLINVVMELRKLCCHPYMLEGVEPDIEDVKESNKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQRMLDLLEDYCTYKNWHYERIDGKVGGAERQVRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGTIEERMMQMTKKKMVLEHLVVGRLKAQNINQEELDDIIRYGSKGLFADENDETGKSRQIHYDDAAIDRLLDREQVGDEEATLDDEDEDGFLKAFKVANFEYIDEVEAAAEEVAAKKRAMENKPTVTPADRSTYWEELLKDRFEVHKHEEFNSMGKGKRTRKMISSVEEDDLAGLEDISSEGEDDSYEADLTDGDSNSTGNASTRRPYRKKARVADSTEPLPLMEGEGKSFRILGFNQSQRAAFVQILMRFGVGDFDWKEFTSRLKQKTYEEIKDYGTLFLSHIAEDITDAPTFSDGVPKEGLRIQDVLVRIAILLLIRDKVKFATEILGTPLFSDDIFFRYPGLKSAKLWKEEHDLVLLRALLKHGYGRWQAIVDDKDLKIQEVICQELNLPFINLPVSGQVGPQVQNGANLTNTEAPNNQTGENGDNDVATDNAHGSGDARNPGQLYQESILYHFRDMQRRQVEFIKKRVLLVEKGLNAEYQKEYFGESNANETNEELKSEPKATSVLNYQSGETDSQTSDRLPRVEAIASEEISVVACDNDSDRLELIRLYNELCKVMEENVMESDQTALAREPVEVKVLNNFLPLETIFKDINRILTPAQQNLEKKSEDLTHVLIGGSTSSSIHQDDCKPDTTVHNESKDDMVIDSEVKRESNPDLVQEKNNIPSIPEARGGDIEMGHETKNDAQLNQETEKSGPGVIVLDD 1410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach3g02000 1410 Gene3D - 1010 1135 - -
Bach3g02000 1410 CDD CD1_tandem 99 171 - -
Bach3g02000 1410 MobiDBLite consensus disorder prediction 1380 1394 - -
Bach3g02000 1410 ProSiteProfiles Chromo and chromo shadow domain profile. 193 252 IPR000953 -
Bach3g02000 1410 CDD CD2_tandem 191 242 - -
Bach3g02000 1410 Gene3D - 190 243 - -
Bach3g02000 1410 MobiDBLite consensus disorder prediction 1110 1137 - -
Bach3g02000 1410 ProSiteProfiles Chromo and chromo shadow domain profile. 101 183 IPR000953 -
Bach3g02000 1410 ProSiteProfiles Rubredoxin-like domain profile. 62 106 IPR024934 GO:0005506
Bach3g02000 1410 Pfam CHD subfamily II, DUF1087 814 875 IPR009463 -
Bach3g02000 1410 Gene3D - 285 497 IPR038718 -
Bach3g02000 1410 SUPERFAMILY Chromo domain-like 67 177 IPR016197 -
Bach3g02000 1410 Pfam PHD-finger 55 97 IPR019787 -
Bach3g02000 1410 MobiDBLite consensus disorder prediction 1336 1364 - -
Bach3g02000 1410 Gene3D - 498 722 IPR027417 -
Bach3g02000 1410 Pfam Chromo (CHRromatin Organisation MOdifier) domain 194 241 IPR023780 -
Bach3g02000 1410 Pfam Chromo (CHRromatin Organisation MOdifier) domain 117 158 IPR023780 -
Bach3g02000 1410 ProSitePatterns Zinc finger PHD-type signature. 55 96 IPR019786 -
Bach3g02000 1410 SMART PHD_3 54 97 IPR001965 -
Bach3g02000 1410 MobiDBLite consensus disorder prediction 874 925 - -
Bach3g02000 1410 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 30 1369 - -
Bach3g02000 1410 CDD SF2_C_SNF 576 702 - -
Bach3g02000 1410 Gene3D - 99 189 - -
Bach3g02000 1410 MobiDBLite consensus disorder prediction 874 895 - -
Bach3g02000 1410 SMART DUF1086_2 883 1043 IPR009462 GO:0003677|GO:0006338
Bach3g02000 1410 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 285 488 IPR027417 -
Bach3g02000 1410 SUPERFAMILY Chromo domain-like 181 243 IPR016197 -
Bach3g02000 1410 ProSiteProfiles Zinc finger PHD-type profile. 52 99 IPR019787 -
Bach3g02000 1410 Pfam CHD subfamily II, SANT-like domain 906 1040 IPR009462 GO:0003677|GO:0006338
Bach3g02000 1410 SMART helicmild6 607 691 IPR001650 -
Bach3g02000 1410 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 45 98 IPR013083 -
Bach3g02000 1410 Coils Coil 807 827 - -
Bach3g02000 1410 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 285 453 IPR014001 -
Bach3g02000 1410 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 581 742 IPR001650 -
Bach3g02000 1410 Pfam SNF2-related domain 285 555 IPR000330 GO:0005524|GO:0140658
Bach3g02000 1410 MobiDBLite consensus disorder prediction 1110 1149 - -
Bach3g02000 1410 Pfam Helicase conserved C-terminal domain 578 691 IPR001650 -
Bach3g02000 1410 SMART DUF1087_2 812 878 IPR009463 -
Bach3g02000 1410 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 490 747 IPR027417 -
Bach3g02000 1410 SMART ultradead3 236 464 IPR014001 -
Bach3g02000 1410 MobiDBLite consensus disorder prediction 1325 1410 - -
Bach3g02000 1410 SMART chromo_7 100 163 IPR000953 -
Bach3g02000 1410 SMART chromo_7 191 245 IPR000953 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach3g02000 Bach-Chr3 27729248 27744738 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach3g02000 267 752 RAD5 or RAD16-like Gene Family AT1G02670 22.144 1.52e-25 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Bach3g02000 SNF2_N 1.1e-58 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach3g02000 K11643 - gmx:100790230 2217.96