Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach3g01990 ATAAGCTCCTCCTGCTTTCCCTAAAAACATACTCCACCACTTATCTTCTCCATCCACACACATCCTCCAACTGCTTTGCCAAACACACGTGCCCTCCCTTCTCTTCCTCTCCTTTTCGTTTTTCCATAGTTGGCCATGAACTCATAGGAACAGCCAACATCGATTTTATCAATTCTTCTGGCTTTCTTACTGGGTCTGTTTTATGGCTTACCACAACCATCACCTCTCTCAAGACCTTCCACTCCACCATTTCACAGACCACCAACAACAGCAGCATCGGCAGAACCAGCCTCTAAGTGACAGCACCTTGCGTACCATATTGCCGGACCAGCTACACTCGTCCCCGGACCCTTCCACCAAACCCGGCTCCGGTCCCCACCACCACAACCCACTCCAAACCGCACCGAATTGGCTCAACAACGCCCTTCTTCGCACCCAGTACAGCGATACTACTAATACTAATAACGATAGTCCCAACGCTGGCAACAATAACAACGGCACCAATTTCCTCAACCTCCACACTGCCGCCTCTGACTCCACTGGAGCTGCTGCTTCCCAGTCGTCTAGTCAATGGCTGTCACGCCCGATCCTCCACCGTAACCACAGTGAGGTCATCGACGACGTCGCCGCCGGGGACTCCATCATCGCCGGCGCCACCATGTCTCATGAATCCACCGATTTGAAGACCGCAAGCGACAATCTTAATCACAAGAGCGAGGCGGTGGTGGTCGACAGCGGTGACGGTTTGGTGAACTGGCAGAATGCTAGGTGCAAGGCTGAGATTCTAGCTCACCCGCTGTACGACCAGCTGCTGTCGGCCCACGTGGCGTGCTTGCGGATCGCTACGCCGGTTGATCAATTGCCCAGAATTGACGCTCAGCTCGCGCAGTCCCAGAATGTGGTCGCCAAGTACTCAGCTTTGGGACATGGTGCTCAGAGCATGGTTGGAGACGAGAAGGAACTCGATCAATTCATGTCACACTACGTTTTGTTGCTCTGTTCCTTTAAAGAACAATTGCAGCAGCATGTCCGGGTCCACGCAATGGAAGCAGTAATGGCTTGTTGGGAAATAGAGCAATCTTTGCAAAGTCTAACAGGGGTTTCACCTGGTGAAGGTACAGGAGCAACAATGTCGGATGACGAGGACGACCAAGTAGATAGTGATGCTAATCTATTTGATGGTAGTTTGGATGGTCCAGACAGTATGGGATTTGGCCCTCTGATTCCAACAGAGACTGAGAGGTCCCTCATGGAGCGTGTAAGGCAGGAATTAAAGCACGAGCTGAAACAGGGTTATAAGGAGAAAATTGTGGACATAAGAGAAGAAATTTTGCGCAAGAGACGAGCAGGGAAACTTCCTGGTGATACGACTTCTGTCCTTAAAACTTGGTGGCAAACACATTCTAAGTGGCCTTACCCTACAGAGGAAGACAAGGCAAGGCTGGTACAGGAAACTGGTTTGCAATTAAAGCAGATCAATAACTGGTTCATCAATCAGAGGAAGAGGAACTGGCACAGCAATCCTTCAACTTCTACTGTCTTGAAAAGCAAACGCAAAAGGTGATGGCAGTGCTGATCGTTACATGTAAATGGTGGAAGAGTCTTGAAACCAATTCCTTCCTTCTCTATATGGTTCATGAGAAATAAGCACATTTTGCTTTTGCTGAAAGGAACATGGCTAATTACACAGATGAAAGTGAAGAGGTAGTGTTAAGGAGCCAAGGCTTGCAGACGGTATAATAGTTGTAATGCAACATATTTAGGAAGTTCAGTCAGGTATTATCATATAGCGAAATCAATTTGGGTAACTACGAGGGCTTATAATTTTTGTTCACTTATTAATGCTTGTGAAATGTAAGGCTAATAGTGAGGGGTTGTGGGTGTACAGTAATAATCATGTGCATTTTTCCTTACAGTCATACTAATTCTTTTTCCCTTTTAA 1942 0.4763 MAYHNHHLSQDLPLHHFTDHQQQQHRQNQPLSDSTLRTILPDQLHSSPDPSTKPGSGPHHHNPLQTAPNWLNNALLRTQYSDTTNTNNDSPNAGNNNNGTNFLNLHTAASDSTGAAASQSSSQWLSRPILHRNHSEVIDDVAAGDSIIAGATMSHESTDLKTASDNLNHKSEAVVVDSGDGLVNWQNARCKAEILAHPLYDQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSALGHGAQSMVGDEKELDQFMSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSDDEDDQVDSDANLFDGSLDGPDSMGFGPLIPTETERSLMERVRQELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKTWWQTHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTSTVLKSKRKRSNAGDGSADRYM 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach3g01990 465 MobiDBLite consensus disorder prediction 41 67 - -
Bach3g01990 465 MobiDBLite consensus disorder prediction 439 465 - -
Bach3g01990 465 FunFam homeobox protein knotted-1-like 3 isoform X1 377 438 - -
Bach3g01990 465 CDD homeodomain 379 440 IPR001356 GO:0003677
Bach3g01990 465 Pfam KNOX1 domain 191 231 IPR005540 GO:0003677|GO:0005634
Bach3g01990 465 Pfam ELK domain 356 377 IPR005539 GO:0003677
Bach3g01990 465 ProSiteProfiles 'Homeobox' domain profile. 376 439 IPR001356 GO:0003677
Bach3g01990 465 SMART KNOX1_2 188 232 IPR005540 GO:0003677|GO:0005634
Bach3g01990 465 ProSiteProfiles ELK domain profile. 356 376 IPR005539 GO:0003677
Bach3g01990 465 SUPERFAMILY Homeodomain-like 378 441 IPR009057 -
Bach3g01990 465 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 57 442 - -
Bach3g01990 465 Pfam KNOX2 domain 248 298 IPR005541 GO:0003677|GO:0005634
Bach3g01990 465 SMART KNOX2_2 244 299 IPR005541 GO:0003677|GO:0005634
Bach3g01990 465 MobiDBLite consensus disorder prediction 298 317 - -
Bach3g01990 465 MobiDBLite consensus disorder prediction 81 105 - -
Bach3g01990 465 Gene3D - 375 450 - -
Bach3g01990 465 SMART ELK_2 356 377 IPR005539 GO:0003677
Bach3g01990 465 Pfam Homeobox KN domain 396 435 IPR008422 GO:0003677|GO:0006355
Bach3g01990 465 SMART HOX_1 378 443 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach3g01990 Bach-Chr3 27653284 27656806 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach3g01990 1 453 Homeobox Transcription Factor Family AT5G25220 65.042 0.0 555
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Bach3g01990 KNOX2 9.4e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach3g01990 - - pcin:129303573 715.301