Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach3g01863 ATGCAGCAAGCTTTGCTTCAGCAACAGCAGATGTACCACCCCGGGATGCTAGCCGCAGCTGTGTCTCAGATGGAGCCTATTCCAAGTGGAAATCTGCCTCCTGGTTTTGACACCTCTTCATGTCGCAGTGTTTATGTAGGAAACATTCATGTAAATGTCACCGATAAACTTCTTGCTGAAGTTTTTCAGAGTGCTGGTCCTCTTGCTGGGTGCAAGCTCATCAGAAAAGAGAAGTCCTCATATGGTTTTGTGGACTACCATGATCGAGCCTCAGCTTCCCTTGCGATAATGACATTGCATGGACGTCAATTATATGGTCAAGCACTTAAGGTGAATTGGGCATATGCCAATAGCAATAGGGAGGATACTTCAGGGCACTTCAATATATTTGTCGGTGATTTGAGTCCAGAGGTTACTGATGCAACTTTATTTGCTTGCTTCTCAGTCTATCCTAGTTGTTCTGATGCCAGGGTCATGTGGGATCATAAAACTGGTCGCTCCAAAGGATATGGTTTTGTTGCTTTCCGTGACCAGCAGGATGCCCAAAATGCCATCAATGATATGACTGGTAAATGGTTGGGGAATAGACAAATACGATGCAATTGGGCAACTAAGGGTGCTGGTGCCAGTTCTAATGATGAGAAGAACAATGAAAACCAAAATGCAGTTGTGCTTACAAATGGATCTTCAGATGGAGGTCAAGAAAATAACAGTGAGGATGCTCCTGAAAACAATTCAGCATACACCACTGTTTATGTTGGCAATCTTCCCCATGATGTAACACAAACGGAACTCCATTGTCAGTTCCATGCACTCGGGGCTGGGGTCATTGAAGAAGTCCGAGTTCAAAGGGATAAAGGTTTTGGATTTGTTAGATACAACACTCATGAGGAAACAGCATTAGCCATTCAGATGGCCAATGGAAGAATTATTCGTGGGAAGACAATGAAGTGCTCCTGGGGTAGCAAGCCAACACCTCCTGGAACAGCTTCAAACCCACTGCCTCCTCCGGCTCAACTATATCAAATCCTTCCAACTGCTGGGATGAACCAGGGCTATTCTCCTGCTGAGTTGTTGGCTTATCAGCGCCAACTGGCCCTTAGTCAGGCTGCTGTACCTGTATCTGGCCTTTCTGGTCAAGCTCTTGTGCAAATGACTGGACAACATGGCCTAGCTGCAGCTTCCATGGGGTTAAGCTCTGGGGGATCACAAACCATGTATGATGGTTATGCTAGTAATTCATCAAGGCAGCAACTCATGTATTATCGTTAA 1272 0.4544 MQQALLQQQQMYHPGMLAAAVSQMEPIPSGNLPPGFDTSSCRSVYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRKEKSSYGFVDYHDRASASLAIMTLHGRQLYGQALKVNWAYANSNREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDHKTGRSKGYGFVAFRDQQDAQNAINDMTGKWLGNRQIRCNWATKGAGASSNDEKNNENQNAVVLTNGSSDGGQENNSEDAPENNSAYTTVYVGNLPHDVTQTELHCQFHALGAGVIEEVRVQRDKGFGFVRYNTHEETALAIQMANGRIIRGKTMKCSWGSKPTPPGTASNPLPPPAQLYQILPTAGMNQGYSPAELLAYQRQLALSQAAVPVSGLSGQALVQMTGQHGLAAASMGLSSGGSQTMYDGYASNSSRQQLMYYR 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach3g01863 423 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 249 323 IPR000504 GO:0003723
Bach3g01863 423 MobiDBLite consensus disorder prediction 223 245 - -
Bach3g01863 423 SMART rrm1_1 250 319 IPR000504 GO:0003723
Bach3g01863 423 SMART rrm1_1 128 201 IPR000504 GO:0003723
Bach3g01863 423 SMART rrm1_1 43 112 IPR000504 GO:0003723
Bach3g01863 423 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 251 317 IPR000504 GO:0003723
Bach3g01863 423 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 129 199 IPR000504 GO:0003723
Bach3g01863 423 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 110 IPR000504 GO:0003723
Bach3g01863 423 SUPERFAMILY RNA-binding domain, RBD 238 330 IPR035979 GO:0003676
Bach3g01863 423 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 40 326 - -
Bach3g01863 423 SUPERFAMILY RNA-binding domain, RBD 41 206 IPR035979 GO:0003676
Bach3g01863 423 CDD RRM2_PUB1 126 205 - -
Bach3g01863 423 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 127 205 IPR000504 GO:0003723
Bach3g01863 423 Gene3D - 121 221 IPR012677 -
Bach3g01863 423 FunFam Nucleolysin TIAR-like protein 126 224 - -
Bach3g01863 423 Gene3D - 227 327 IPR012677 -
Bach3g01863 423 Gene3D - 35 120 IPR012677 -
Bach3g01863 423 FunFam Nucleolysin TIAR-like protein 1 125 - -
Bach3g01863 423 FunFam Oligouridylate-binding protein 1C 226 327 - -
Bach3g01863 423 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 116 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach3g01863 Bach-Chr3 26803136 26809871 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach3g01863 43 317 Eukaryotic Initiation Factors Gene Family AT3G16380 26.027 8.83e-19 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach3g01863 K13201 - gmx:100777108 799.66