Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach3g01581 ATGGCACAAACACTAGCAATGCCTGTGGCGCCCTCTCTCTCTATAATCTACAACGGCCATAGCTCTAATTCTCTTCCAAAGAGCGCCTCTTTCCCCATTTTGAGCGCTCCCAAGGTTCGTGGTCTAAACATTCAATGCGTCCGTGTTGGAGGTGTGGAGATTCCAAACAACAAGAGAATTGAGTATTCTCTTCAGTATATTCATGGAGTTGGTCGGAGTAGATCTCGCCAAATCCTAACTGATATAGGCATGGACAACAAAATCACAAAAGATTTGTCTGAGGAAGAGCTCGTCATTCTTAGGGGTGAAGTCTCCAAATATGTGATTGAAGGAGACTTGAGACGGTTTAATGCGCTTAACATAAGGAGATTGAAGGAGATCCAGTGCTATAGAGGGATAAGACATATTCGGGGGCTACCCTGCAGAGGACAGCATACCAAGAACAATTGCCGAACCTTGAAGGGTAAGAGAATTGCCATAGCTGGCAAGAAAAAGAAGTAA 501 0.4451 MAQTLAMPVAPSLSIIYNGHSSNSLPKSASFPILSAPKVRGLNIQCVRVGGVEIPNNKRIEYSLQYIHGVGRSRSRQILTDIGMDNKITKDLSEEELVILRGEVSKYVIEGDLRRFNALNIRRLKEIQCYRGIRHIRGLPCRGQHTKNNCRTLKGKRIAIAGKKKK 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach3g01581 166 Hamap 30S ribosomal protein S13 [rpsM]. 46 162 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Bach3g01581 166 SUPERFAMILY S13-like H2TH domain 47 157 IPR010979 GO:0003676
Bach3g01581 166 FunFam 30S ribosomal protein S13 116 165 - -
Bach3g01581 166 ProSitePatterns Ribosomal protein S13 signature. 131 144 IPR018269 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Bach3g01581 166 Gene3D 30s ribosomal protein s13, domain 2 116 166 IPR027437 -
Bach3g01581 166 NCBIfam 30S ribosomal protein S13 48 157 IPR019980 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Bach3g01581 166 Gene3D - 47 115 - -
Bach3g01581 166 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 42 164 - -
Bach3g01581 166 FunFam 30S ribosomal protein S13 42 115 - -
Bach3g01581 166 Pfam Ribosomal protein S13/S18 48 152 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Bach3g01581 166 ProSiteProfiles Ribosomal protein S13 family profile. 49 155 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach3g01581 45 164 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 28.472 3.19e-06 43.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach3g01581 K02952 - jre:109018770 257.299