Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach3g01569 ATGGCACAGGCAGAGTCTCAGAGGTCTACAGGCACTGTAAAATGGTTTAATGTACAGAAGGGTTTCGGATTCATAGCTGCAGATGATGGTGGTGACGATCTTTTTGTTCATCATAGTTCGATCCGATCCGATGGGTATGGGACCTTAGGCGAGGGTCAGCAAGTCGAGTTTATTGTGGATTATGACGAGGGTGGACGGACCAAAGCTGTTGATGTAACAGCTCATGTTAGATCTCGCCGTTTTGACGGTGTTCGTGGTAGCGGAAGGGGGAGAGGAGCTTATGGGGGCAGGGGCAGAGGGGTTGGATATGACGGCTATGGCGGACGCTATGTTGGTGGTGATGGTTATGGGTATGGTAGAGGTGGAGGGCTTGGGAGAAGAGGCGGTGGCTACGGTGGTGGAGGTGGAAGATCTGGTGGTGGTGGTCTTGAATGTTATAATTGTGGTCGAATAGGTCATTTGGCGAGAGATTGTTATCAGGGTAGTGGTGGTGTGACTAGGAGACGCGGTGGTGGATTTGGCGGCGGAGGAGCGGCAGGAGGGTGTTTCAATTGTGGGGAGGAAGGGCATTTTGCCAGGGAATGTCCCAATGTTGAGAAATGA 603 0.5191 MAQAESQRSTGTVKWFNVQKGFGFIAADDGGDDLFVHHSSIRSDGYGTLGEGQQVEFIVDYDEGGRTKAVDVTAHVRSRRFDGVRGSGRGRGAYGGRGRGVGYDGYGGRYVGGDGYGYGRGGGLGRRGGGYGGGGGRSGGGGLECYNCGRIGHLARDCYQGSGGVTRRRGGGFGGGGAAGGCFNCGEEGHFARECPNVEK 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach3g01569 200 ProSiteProfiles Cold-shock (CSD) domain profile. 8 74 IPR002059 GO:0003676
Bach3g01569 200 Pfam Zinc knuckle 181 197 IPR001878 GO:0003676|GO:0008270
Bach3g01569 200 Pfam Zinc knuckle 144 158 IPR001878 GO:0003676|GO:0008270
Bach3g01569 200 Gene3D - 1 73 IPR012340 -
Bach3g01569 200 SMART c2hcfinal6 144 160 IPR001878 GO:0003676|GO:0008270
Bach3g01569 200 SMART c2hcfinal6 181 197 IPR001878 GO:0003676|GO:0008270
Bach3g01569 200 ProSitePatterns Cold-shock (CSD) domain signature. 22 41 IPR019844 -
Bach3g01569 200 PANTHER COLD SHOCK DOMAIN PROTEIN 2 4 198 - -
Bach3g01569 200 SMART csp_8 10 75 IPR011129 GO:0003676
Bach3g01569 200 SUPERFAMILY Retrovirus zinc finger-like domains 136 197 IPR036875 GO:0003676|GO:0008270
Bach3g01569 200 CDD CSP_CDS 10 73 IPR002059 GO:0003676
Bach3g01569 200 SUPERFAMILY Nucleic acid-binding proteins 6 73 IPR012340 -
Bach3g01569 200 Gene3D - 178 200 - -
Bach3g01569 200 Gene3D - 137 171 - -
Bach3g01569 200 PRINTS Cold shock protein signature 47 65 IPR002059 GO:0003676
Bach3g01569 200 PRINTS Cold shock protein signature 32 41 IPR002059 GO:0003676
Bach3g01569 200 PRINTS Cold shock protein signature 11 26 IPR002059 GO:0003676
Bach3g01569 200 ProSiteProfiles Zinc finger CCHC-type profile. 182 197 IPR001878 GO:0003676|GO:0008270
Bach3g01569 200 Pfam 'Cold-shock' DNA-binding domain 10 73 IPR002059 GO:0003676
Bach3g01569 200 ProSiteProfiles Zinc finger CCHC-type profile. 145 158 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach3g01569 Bach-Chr3 24678833 24679435 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Bach3g01569 CSD 4.4e-23 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach3g01569 - - qsa:O6P43_015217 165.236