Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach3g01558 ATGTCTTTGAGCCCTCCTCGAGTGAGGACTAATGGGCAACCCAGGAACTACCCGCTCTATTGGTGCTTTCAGTGTAATCGAATGGTCAGGGTCGCCTCCTCGAATGAGATTTTCTGCCCTCGCTGTTTTGGGGAATTTCTCTGTGAATTAAATATATCAAGGCCTGGACTCGTCGTCAATTTCACTGATCCCGATCCTTCCCCAGAAGCACGTTTGCTCGAAGAGCTTGCTCTGATGCTTGACCCACCAATCAGGCGCCCTGACAGCGGTCGCCATGACACGGAAACTGAACCTCTAAGACGCTATCGTTGGATTCAGAGACAACCTCGCAATAGGGAACAAGAAGACAGACACCATTCGGGACAGAGGCAGCGTGAAGAAATTCCTGTCCGTCACGTAAGACGTCCACAATATCATAGTGGGTTTGATTTTGATAATGATATTGATATCCAAGGCGATGGCTTGGACCCAGAACCTGGAATCCAACCTCGTCGTCGGGCATGGATAATTCTTCCACCAATGGATCCTTCTGCTCCATTTGAACCGTTTCCTCGACCTCGACGAGAAAATCCTATCCCACTTGGGGCTAATCCAAGAGACTACTTTTTCGGGCCGGGTCTTAACGAATTGATTGAACAATTGACTGAGAATGACCGGCAAGGTCCGCCACCAGCGCCAGATAGAGCAATCAATGCGATCCCGACGGTGAAAGTCTCGGAGGCCCATTTAAAGGAAAACTCTCACTGCCCCGTTTGCCAAGAAGAGTTTGAAGTTGGTGGGCAAGCAAGGGAGTTACCTTGCAAACATATATATCATTCTGATTGTATTGTTCCTTGGTTAAGGCTTCACAATTCTTGCCCTATTTGCCGGCATGAAGTGCCGGTGTCTTCTGAATCCGATGAATCTCAGGAAGGTGGAGAAGGCAGGTTTCGAAGGTGCTTGAGGTGGACGCGATTGGCTTCTCTGTTGCCTTTCCATGGAAGGTATCGACGGGTTGACCCAGAGAACGCCGCAGCATCTCCGAGTCAAAGGGGTGAAAATTAA 1044 0.4933 MSLSPPRVRTNGQPRNYPLYWCFQCNRMVRVASSNEIFCPRCFGEFLCELNISRPGLVVNFTDPDPSPEARLLEELALMLDPPIRRPDSGRHDTETEPLRRYRWIQRQPRNREQEDRHHSGQRQREEIPVRHVRRPQYHSGFDFDNDIDIQGDGLDPEPGIQPRRRAWIILPPMDPSAPFEPFPRPRRENPIPLGANPRDYFFGPGLNELIEQLTENDRQGPPPAPDRAINAIPTVKVSEAHLKENSHCPVCQEEFEVGGQARELPCKHIYHSDCIVPWLRLHNSCPICRHEVPVSSESDESQEGGEGRFRRCLRWTRLASLLPFHGRYRRVDPENAAASPSQRGEN 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach3g01558 347 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 110 294 - -
Bach3g01558 347 FunFam E3 ubiquitin-protein ligase RING1-like 213 296 - -
Bach3g01558 347 MobiDBLite consensus disorder prediction 85 132 - -
Bach3g01558 347 CDD RING-H2_RNF126-like 249 290 - -
Bach3g01558 347 SMART ring_2 249 289 IPR001841 -
Bach3g01558 347 ProSiteProfiles Zinc finger RING-type profile. 249 290 IPR001841 -
Bach3g01558 347 Pfam zinc-ribbon 20 50 IPR039525 GO:0061630
Bach3g01558 347 SUPERFAMILY RING/U-box 229 296 - -
Bach3g01558 347 MobiDBLite consensus disorder prediction 83 132 - -
Bach3g01558 347 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 212 296 IPR013083 -
Bach3g01558 347 Pfam Ring finger domain 248 290 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach3g01558 Bach-Chr3 24614204 24615247 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach3g01558 221 325 C3H Transcription Factor Family AT1G68180 45.133 1.80e-26 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach3g01558 K11982 - qsa:O6P43_015206 392.889