Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach3g01507 ATGGGGAGGGGTAAGATTGAGATCAAGAGGATAGAGAACTCCAGCAACAGGCAAGTAACCTACTCAAAGAGGAAGAATGGGATCCTGAAGAAGGCAAAGGAAATCACTGTTCTATGTGATGCCCAAGTTTCTCTTATCATTTTTGCTCCCTCTGGAAAGATGCACGAGTACATCAGTCCTTCTACCACGTTGATTAACATGCTTGACAGATACCACAAAGCATCTGGGAAGAGGCTCTGGGACGCTAAGCATGAGAACCTCAACAATGAAATTGATAGGCTCAAGAAAGAGAATGACAGCATGCAAATTCAGCTCAGACATTTGAAGGGGGAGGATGTTACCTCTTTGAACTGCAAGGAGCTGATGGCCATAGAGGATGCCCTAGAAAATGGCCTCACCAGTATCCGGTTTTCCTCCGTGCGGAGGGGCTCAGGAAAATGCTGCCTTCTAGGGTTTTCTTTAGGCGCTTTGAATATTTCTGAGAGTTTCGTTGCAGATATTTTGGTACGAGCAACGGGTTAG 522 0.4579 MGRGKIEIKRIENSSNRQVTYSKRKNGILKKAKEITVLCDAQVSLIIFAPSGKMHEYISPSTTLINMLDRYHKASGKRLWDAKHENLNNEIDRLKKENDSMQIQLRHLKGEDVTSLNCKELMAIEDALENGLTSIRFSSVRRGSGKCCLLGFSLGALNISESFVADILVRATG 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach3g01507 173 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bach3g01507 173 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bach3g01507 173 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bach3g01507 173 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bach3g01507 173 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bach3g01507 173 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bach3g01507 173 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Bach3g01507 173 ProSiteProfiles K-box domain profile. 84 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bach3g01507 173 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Bach3g01507 173 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bach3g01507 173 Gene3D - 13 78 IPR036879 GO:0003677|GO:0046983
Bach3g01507 173 Coils Coil 77 111 - -
Bach3g01507 173 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 137 - -
Bach3g01507 173 Pfam K-box region 82 136 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bach3g01507 173 Gene3D - 79 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach3g01507 Bach-Chr3 24256025 24261741 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach3g01507 1 140 MADS-box Gene Family AT5G20240 70.000 6.28e-69 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Bach3g01507 K-box 3.2e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach3g01507 K09264 - gmx:100817554 242.276