Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach3g01393 ATGTCTTCGTCTAGACCATCAATGGCTACCAGACGGAGGACTCATGCTTTAAAACCGGCTTCCAAAATCCCATTCTTGGACCCCGACGATATGTGCTGCGAGCGGTGTGGGTCCGGCGAATCACCGGCTGAGTTGCTTCTCTGCGACAAGTGCGATCGAGGATACCACCTATTCTGCCTCACACCTGTCCTTGTTTCTGTGCCCAAAGGGTCTTGGTTTTGTCCCATCTGCTCTAAGACCAAGAAGCTCAAATCTTTTCCTCCAATTCAGACCAAAATCATTGACTTTTTTCGCATTCAACGTTCGTCCCAACCTGCCCAGACACTAAGTCAAGATACCAGAAAGAAAAGAAAGCGAGGTAGCAGCTTAGTGGTGTCAAAAAAGAAAAGGAAATTACTTCCATTCTGCCCAAGTGAGGATCTTGCAAGGAGGATTGAACAGATGCAATCACTAGCATCGGCATTGATATCCAATAACACAGAATTCAGTAACAAACTTACTTACATGCCTGGAATGGCACCAAGGTCAGCAAATCGGCCTGCTCTTGAGCAGGGCGGAATGCAGGTCTTGTCAAAAGAAGATACTGAGACCTTGAACTTGTGCAAGAGAATGATGGAAAGAGGAGAATGTCCGCCCCTCATGGTTGTTTCTGATCCTCTCGAAGGGTTCACCGTTGAAGCCGATAGACATATAAAAGATTTGACGATAATCACAGAATATGTTGGAGATGTGGACTATTTGAAGAATCGCAAGAATGATGATGGGGATAGCATAATGACGCTGCTTTATGCTTCTGATCCTTCACAGACACTTGTCGTCTGTCCAGATAAACGCAGTAATATTGCCCGATTTATTAATGGCATCAACAATCACACACCGGAAGGAAAAAAGAAGCAAAACTTGAAATGCGTGAGATTTGATGTGGATGGTGAATGTCGGGTTCTATTGATTGCCAACAGAGATATAGCAAAAGGCGAGAGATTATACTATGACTACAATGGATACGAGCATGAATATCCAACAGAACACTTCGTCTAG 1038 0.4441 MSSSRPSMATRRRTHALKPASKIPFLDPDDMCCERCGSGESPAELLLCDKCDRGYHLFCLTPVLVSVPKGSWFCPICSKTKKLKSFPPIQTKIIDFFRIQRSSQPAQTLSQDTRKKRKRGSSLVVSKKKRKLLPFCPSEDLARRIEQMQSLASALISNNTEFSNKLTYMPGMAPRSANRPALEQGGMQVLSKEDTETLNLCKRMMERGECPPLMVVSDPLEGFTVEADRHIKDLTIITEYVGDVDYLKNRKNDDGDSIMTLLYASDPSQTLVVCPDKRSNIARFINGINNHTPEGKKKQNLKCVRFDVDGECRVLLIANRDIAKGERLYYDYNGYEHEYPTEHFV 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach3g01393 345 CDD PHD_RSF1 33 77 - -
Bach3g01393 345 SMART PHD_3 32 78 IPR001965 -
Bach3g01393 345 Pfam PHD-finger 33 79 IPR019787 -
Bach3g01393 345 ProSitePatterns Zinc finger PHD-type signature. 33 77 IPR019786 -
Bach3g01393 345 SUPERFAMILY FYVE/PHD zinc finger 20 84 IPR011011 -
Bach3g01393 345 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 87 IPR013083 -
Bach3g01393 345 CDD SET_ATXR5_6-like 208 345 - -
Bach3g01393 345 FunFam Histone-lysine N-methyltransferase ATXR5 116 345 - -
Bach3g01393 345 Pfam SET domain 143 333 IPR001214 GO:0005515
Bach3g01393 345 Gene3D SET domain 117 345 IPR046341 -
Bach3g01393 345 ProSiteProfiles Zinc finger PHD-type profile. 30 80 IPR019787 -
Bach3g01393 345 PANTHER N-LYSINE METHYLTRANSFERASE KMT5A 106 343 - -
Bach3g01393 345 ProSiteProfiles SET domain profile. 211 333 IPR001214 GO:0005515
Bach3g01393 345 SUPERFAMILY SET domain 202 333 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach3g01393 Bach-Chr3 23409989 23412618 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach3g01393 21 83 C2H2 Transcription Factor Family AT3G01460 39.683 1.09e-11 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Bach3g01393 SET 7.4e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach3g01393 K24406 - qsa:O6P43_014972 533.102