Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach3g01361 ATGAGTGGTCGCTTTTCTCGCACAATTTATGTTGGCAACCTGCCATCTGATATAAGGGAATCAGAAATTGAAGACCTGTTCTACAAGTATGGTCGAATATTGGATGTTGAATTGAAGATTCCACCTCGCCCTCCATGTTATTGTTTTGTTGAGTTTGACAATGCTCGAGATGCAGAAGATGCTATCCGGGGTCGTGATGGCTACAACTTTGATGGGTGTCGATTAAGGGTGGAGCTTGCCCATGGTGGGAGAGGGCCATCATCAAGTGATCGCCGCGGTTATGGCGGCGGCAGCGGCGGCGGTGGTGGTGGTGGTGGGGGCCGTTTTGGCGTCTCACGCCATTCTGAATATCGAGTTATTGTTCGTGGACTCCCATCTTCTGCATCCTGGCAAGATTTGAAGGATCATATGCGAAAAGCCGGTGATGTGTGTTTTGCTGAGGTTTCCCGTGACAGTGAAGGTACTTTTGGCATTGTTGACTACACTTCTTCTGATGACATGAAATACGCAATCCGGAAACTGGACGACACCGAGTTTAAAAATCCTTGGGCAAGAGCTTTTATTCGGGTGAGGAAGTATGAAGGTAGTTCATCAAGGAGCCGCAGCAGAAGCAGAAGTCCCAAAAGAATTCGAAGTAAGTCATTGGAGCGATCTGTCTCAAGGTCACCATCAAGATCCAGATCCAGATCCAGATCAGCATCACCTATTAAACCTTCCAGGCTGAGGTCAAGATCAAGATCTGGGTCTCCACGCCAGGTGCGGTCAGGTAGTGATTGA 777 0.4839 MSGRFSRTIYVGNLPSDIRESEIEDLFYKYGRILDVELKIPPRPPCYCFVEFDNARDAEDAIRGRDGYNFDGCRLRVELAHGGRGPSSSDRRGYGGGSGGGGGGGGGRFGVSRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTSSDDMKYAIRKLDDTEFKNPWARAFIRVRKYEGSSSRSRSRSRSPKRIRSKSLERSVSRSPSRSRSRSRSASPIKPSRLRSRSRSGSPRQVRSGSD 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach3g01361 258 Gene3D - 2 115 IPR012677 -
Bach3g01361 258 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 7 256 - -
Bach3g01361 258 Gene3D - 116 193 IPR012677 -
Bach3g01361 258 SUPERFAMILY RNA-binding domain, RBD 6 186 IPR035979 GO:0003676
Bach3g01361 258 MobiDBLite consensus disorder prediction 209 223 - -
Bach3g01361 258 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Bach3g01361 258 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 181 IPR000504 GO:0003723
Bach3g01361 258 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Bach3g01361 258 MobiDBLite consensus disorder prediction 194 258 - -
Bach3g01361 258 SMART rrm1_1 118 187 IPR000504 GO:0003723
Bach3g01361 258 SMART rrm1_1 8 78 IPR000504 GO:0003723
Bach3g01361 258 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 195 IPR000504 GO:0003723
Bach3g01361 258 MobiDBLite consensus disorder prediction 224 258 - -
Bach3g01361 258 MobiDBLite consensus disorder prediction 81 108 - -
Bach3g01361 258 FunFam serine/arginine-rich splicing factor SR34A-like 117 194 - -
Bach3g01361 258 FunFam serine/arginine-rich splicing factor SR34A-like 2 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach3g01361 Bach-Chr3 23220828 23223719 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach3g01361 6 201 Eukaryotic Initiation Factors Gene Family AT4G34110 24.020 3.26e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach3g01361 K12890 - gmx:100800653 357.836