Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach3g01314 ATGGGTAGGCGAAAACAAAGTAGACCCCATCGATCAGGCGGAATAATACTAGAAACACCAACTAATGCTGAAGCAGAAGTGGATAAACAGAGAACAGCAGAAACAGGGGAAGAACCAAAGAATGAATTTGGCGAAATTGATAAACCTTACTTTGTGGAAGTTGATAGGTCTAGTTGGTTATCAAATGAGCACCTTGATATATCTGAAATCGTTTTAATAGATTTAAATTTGAGAGAAGGCTTTTCAGGTTTTGAGCTGTCTGAGGATTTTTATCAAGATTCTCAGTATTCTTTAAGATTTCGGCTGTGTAATGTCAATAATTTTCTTGGTCGAATTAAATTAGGCCATTGGCCTGTATTGTCTTGCTCTGATATTCATCTGGAGTTTGTAAAAAGAGAAATGGCAGATGATGTTGAAACATGTACGGTGATGTTATCTGGAATTTTTGATGGACCTGATGAAGGTATATCTGGTCTAGTTCACTTGGCAAGTTTGAAATTCTTTTCGTTGAGGCTGGTTAATGGGCTTAAATTTTCAGAGGACTTGTTCTCCCTTAGGATAAGAGTTGAGGTACTAAAGAGTGCCTTTAATGCATGTGAGTCACTTCTTGATGGTTCCAGACAAGTATGGAAAAAGAGTATGATGAATGTCATGGCTTGGCTACGTCCTGAAGTAATGACTTCAGAACATAGGTATGGGGTTGCTAGCCATATGAAAATGGAAGTTAATCAACCAAAAGAGATTGGAGATGGCACTTGCAGCACCAAGAAGCGTTCAAGGTTTGATCCTGCAGGATTTTATGAAGCCATTAAGCCTTCAAAAGCAGAGCCCATGCTTGAAGATAATATACCTGACTTACTTCCTGAGTTGAGACCTTATCAACGACGTGCAGCTTTCTGGATGGTAGAACGAGAGAAAAACGTAGCAGGAAGTCAGGGCGAAAGAGAAAGAAGTCAGTTTCACTCTCCATTATGTGTGCCCGTGGATTTTATCGACAGTAGTTGTATAATGTTCTTCAATCCATTCAGTGGAAATATTTCATTGTGTCCAGATTCTTCTTCAACTTATGTCCTTGGAGGCATTCTTGCTGATGAGATGGGCTTGGGGAAAACCGTTGAACTACTTGCTTGCATCTTTGCTCACCAGAGATCAGCATCTGAATGTGGCATTCTAATGGATTCTGTATTGGAAGATAATGGGGATCAAAAATTCAATTTTAAAAGGCTTAAAAGAGAACGTGTTGAATGCACATGTGGGGCTGTGAGTGAAAGTCTCAAATATAAAGGACTGTGGGTTCAGTGTGACATTTGTGATGCTTGGCAACATGCAGACTGTGTTGATTATTCACCTAAAGGAAAAGCTTTGAAATCAAAAAAAGGATCTGAAAGCAAGAAATTCAAAACCACCATAGCTGTGAGGGATGGTAAATATGTATGTCGGATCTGCTCTGAGCTAATACAAGCTACCGAATCTCCCATTTCTTCTTGCGCCACCCTTATTGTCTGTCCAGCTCCAATTTTGCCCCAGTGGCATGATGAGATTATACGTCATACACGCCCAGGATCCTTGAAAACTTATGTTTATGAGGGCGTACGGGAAACAACTTTCTCCAATGAATCTGCTGTGGATATAAGTGAACTTGCTGGTGCCGACATTGTATTAACAACCTATGATGTGCTTAAAGAGGACTTGTCCCATGATTCTGATAGACATGAAGGTGATCGACATTTTTTGAGATTTCAGAAAAGGTACCCTGTCATCCCAACTCTTCTTACCAGAATATACTGGTGGAGGGTTTGTCTAGATGAGGCTCAAATGGTAGAGAGTAATGCTGCTGCTGCCACTGAAATGGCTCTTCGACTTCATGCACAATATCGTTGGTGCATTACAGGGACTCCCATTCAGCGGAAGCTTGATGACTTATACGGACTTCTACGATTCGTTAAAGCAAGTCCTTTCAATACACAGAGGTGGTGGAGTGAAGTTATTCGAGATCCTTACGAGAAGGGAGATATTGGAGCTATAGAATTTGCACATAAAATTTTCAAACATATCATGTGGCGCTCTTCGAAAGAACATGTCGCAGATGAGTTGCAGCTTCCCTCCCAGGAGGAGTGCCTCACTTGGCTCACTCTCTCACCAATAGAAGAACACTTCTACCAGAGGCAACATGAAACTTGCGTTAACTATGCTCATGAAGTTATAGAAAGTTTAAGATATGATATTCTCAATAAAACAGTCCCAGGTTCTGCATCGTCAGATGGTTTGTCTGATCCTTTCATCACTCATGCTGAGGCAGGGAAGCTATTGAATGCTCTGCTCAAGCTTCGCCAGGCATGCTGTCACCCTCAGGTTGGCAGTTCTGGATTGCGTTCTCTGCAGCAGTCACCCATGACCATGGAGGAAATACTAATGGTTCTTATAAATAAGACTAAGGTAGAAGGTGAGGAAGCTCTCAGGAGGTTAGTTGTTGCTTTGAATGGGCTTGCAGCAATAGCTATTATACAGAAGGATTTTTCTCAAGCTGCTCTACTATACAATGAAGCACTGGCTTTAGCAGAAGAACATTCAGAGGATTTCCGTCTGGATCCTTTGTTAAATATCCACATTACTCATAATCTTGCTGAGATACTTCCACAGACTACAAACCTTCCCATAAGTTTTCCCTCCAAAGAAAAGCAATTCTCTGGAACTTCTGCACATAGGACGACCAGAAAACATGACATTGAAAAGACCGATCATTGTCTTCTGAAGAGGCAAAAAGTGAGTGTCTCAGATGATTCAGGTTTCATGGTGGCTTGTGGAGAACCACAGGATGTTACATCGATTTTATCAGAAAATGGCATAAATGAGAATCAAGAATCTGATAGTGTATCAGTCAATCCACTCAAATATCTGATATCAGAATGTGAGGAGTTAAAACAGAAGTTCTTATCTGTGTTCAGTTTAAAGCTATCTGCATCTCAACAGGAGTTTCAAAAATGTTATATGCAGGTTTGTAATGCATCTAGTGACAGAACAAATCAAGATAGCACTTGGTGGTTAGATGCACTTCACCATGCTGAGCAAAACAAGGATTCATCAACTGAGTTGGTTAGAAAGATTGAAGAAGCCATCTCAACTTCAAACAATTCAAAGTCATCAAGAATTGCTGCTCGTTTCAGGAGCATAACCACTCTGAAGTATCAAATACAGACAGGTTTGGATCAATTAGAAGCCTCTAGAAAAGTGCTACTTGATCGACTTTTAGAAATTGATCAGACAATGCAAAAACCAAAGGAAGAGGACATTGAGCGTATGGGTAGATGTCGAAATTGTCAGCCTAATGCTGACGGTCCTCCATGTGTTCTGTGTGAGCTAGATGAATTGTTTAAGGATTATGAAGCAAGAATTTTTTCACTAAAGAATGAACGAGGAGGGATAATTACCTCTGCTGAGGAGGCAATAGATTTGCAGAAGAAAAATTCCGCACTGAATCGTTTCCTCTCAAAACTGTCACGAGCTAATCATGGCTCAATGGTATCTGATATTGGCTCTGAAGAATCCAAGAAAAGAAATGTTGGGGAAAGAGTTGTGGTTTCAAGATCAGCATCTCAATTAGAGGTTATGCTTGGAGCTATTAAGAGCTATTGCAAGTCTCACTTAGGAAGGGAGATTGTTTCAGCAGCCACCCATCATTTACATACTCTTGAGATATTGCGAAAGGAGTTCAGTAATGCAAGGCTTTTAGCGATAGCACAAGCTCAATATCTGCTTGCACATGATGAAATACAAATGGCAATTTCCCGTTTGCATCTGAGGGCAAATGAAAATGACAAATCACTTGACGCTTTAGGCGAAGATGAACTATGTGCCTCAAGCTCTAATTTTTCCCATGATAAATTGATGTCGCTGGCCCTGTTGTCACAGATTAAAGGAAAACTCCGCTACTTAAAGGGTTTGGTGCAATCTAAACAAAAACTACCACCAGAAAGTCCAAATAGTTCTTCATCCACTCAAGAGACAACTAGGATGTCGAACTTAATGGAAGAGAAAGGTCAACTCATATCTAAAGCTGATGAGGAAACATGCCCAATTTGTCAAGACAAGCTAGGCAGTCAGAAAATGGTTTTTCAATGTGGGCATGTTACATGCTGTAAATGCTTATTTGCTATGACTGAGCAAAGACTTCAAGTGAAATGGGTGATGTGCCCCACATGCCGGCAGCACACTGACTTTGGGAACATTGCTTATGCCGTTGATGGACAGAATGAATCTTCCGATTCTTCTGTGCTGCATAAAATTGACAGCCATGAAAAATGGGAAGCATCCATACCTGTTAAAGGTTCATATGGAACTAAGATTGAAGCAGTTACAAGAAGAATCTTGTGGATCAAGTCGACAGATTCTAAAGCAAAAGTCCTTGTATTTTCAAGTTGGAATGATGTTCTTGACGTATTGGAACATGCCTTTGTTGCCAATGACATCACCTACATCCGAATGAAAGGAGGCAGAAAATCACATGTTGCTATCAGTCAATTTAGAGGACAGCAGGATGGCAGAAAAGAAGACGACGACAACATTAAATCCCAGAAACCAACGTCAAAATCTATTCAGGTGTTATTAATTTTAATCCAACATGGAGCAAATGGCCTCAATCTTTTGGAAGCACAGCATGTGGTCCTTGTAGAGCCTTTACTCAACCCAGCTGCAGAAGCACAAGCTATCAGCCGTGTTCATCGGATTGGACAGAAAAATAAGACTCTCATTCATCGTTTTATTGTAAAAAATACAGTTGAAGAAAGCATATATAAATTGAACAGAAGCAGGAGCAATCATAAATTCATCAGTGGGAACACCAAAAATCAAGATCAACCTGTTTTGACCCTGAAAGACGTTGAATCCTTACTAGCCACAGCCCCATTACCCGTGCCGGAAAGTGATGAAAGACCTGGTTCAAGTCTAAGGCATTTGCCGCCTTCTGTTGCTGCTGCTATTGCTGCTGAGAGGAGATTACATGAACAAAGGACATAA 5013 0.4059 MGRRKQSRPHRSGGIILETPTNAEAEVDKQRTAETGEEPKNEFGEIDKPYFVEVDRSSWLSNEHLDISEIVLIDLNLREGFSGFELSEDFYQDSQYSLRFRLCNVNNFLGRIKLGHWPVLSCSDIHLEFVKREMADDVETCTVMLSGIFDGPDEGISGLVHLASLKFFSLRLVNGLKFSEDLFSLRIRVEVLKSAFNACESLLDGSRQVWKKSMMNVMAWLRPEVMTSEHRYGVASHMKMEVNQPKEIGDGTCSTKKRSRFDPAGFYEAIKPSKAEPMLEDNIPDLLPELRPYQRRAAFWMVEREKNVAGSQGERERSQFHSPLCVPVDFIDSSCIMFFNPFSGNISLCPDSSSTYVLGGILADEMGLGKTVELLACIFAHQRSASECGILMDSVLEDNGDQKFNFKRLKRERVECTCGAVSESLKYKGLWVQCDICDAWQHADCVDYSPKGKALKSKKGSESKKFKTTIAVRDGKYVCRICSELIQATESPISSCATLIVCPAPILPQWHDEIIRHTRPGSLKTYVYEGVRETTFSNESAVDISELAGADIVLTTYDVLKEDLSHDSDRHEGDRHFLRFQKRYPVIPTLLTRIYWWRVCLDEAQMVESNAAAATEMALRLHAQYRWCITGTPIQRKLDDLYGLLRFVKASPFNTQRWWSEVIRDPYEKGDIGAIEFAHKIFKHIMWRSSKEHVADELQLPSQEECLTWLTLSPIEEHFYQRQHETCVNYAHEVIESLRYDILNKTVPGSASSDGLSDPFITHAEAGKLLNALLKLRQACCHPQVGSSGLRSLQQSPMTMEEILMVLINKTKVEGEEALRRLVVALNGLAAIAIIQKDFSQAALLYNEALALAEEHSEDFRLDPLLNIHITHNLAEILPQTTNLPISFPSKEKQFSGTSAHRTTRKHDIEKTDHCLLKRQKVSVSDDSGFMVACGEPQDVTSILSENGINENQESDSVSVNPLKYLISECEELKQKFLSVFSLKLSASQQEFQKCYMQVCNASSDRTNQDSTWWLDALHHAEQNKDSSTELVRKIEEAISTSNNSKSSRIAARFRSITTLKYQIQTGLDQLEASRKVLLDRLLEIDQTMQKPKEEDIERMGRCRNCQPNADGPPCVLCELDELFKDYEARIFSLKNERGGIITSAEEAIDLQKKNSALNRFLSKLSRANHGSMVSDIGSEESKKRNVGERVVVSRSASQLEVMLGAIKSYCKSHLGREIVSAATHHLHTLEILRKEFSNARLLAIAQAQYLLAHDEIQMAISRLHLRANENDKSLDALGEDELCASSSNFSHDKLMSLALLSQIKGKLRYLKGLVQSKQKLPPESPNSSSSTQETTRMSNLMEEKGQLISKADEETCPICQDKLGSQKMVFQCGHVTCCKCLFAMTEQRLQVKWVMCPTCRQHTDFGNIAYAVDGQNESSDSSVLHKIDSHEKWEASIPVKGSYGTKIEAVTRRILWIKSTDSKAKVLVFSSWNDVLDVLEHAFVANDITYIRMKGGRKSHVAISQFRGQQDGRKEDDDNIKSQKPTSKSIQVLLILIQHGANGLNLLEAQHVVLVEPLLNPAAEAQAISRVHRIGQKNKTLIHRFIVKNTVEESIYKLNRSRSNHKFISGNTKNQDQPVLTLKDVESLLATAPLPVPESDERPGSSLRHLPPSVAAAIAAERRLHEQRT 1670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach3g01314 1670 SMART helicmild6 1478 1576 IPR001650 -
Bach3g01314 1670 SUPERFAMILY FYVE/PHD zinc finger 412 484 IPR011011 -
Bach3g01314 1670 ProSitePatterns Zinc finger PHD-type signature. 416 482 IPR019786 -
Bach3g01314 1670 ProSiteProfiles Zinc finger RING-type profile. 1357 1401 IPR001841 -
Bach3g01314 1670 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER 1 1669 - -
Bach3g01314 1670 SMART PHD_3 1356 1401 IPR001965 -
Bach3g01314 1670 SMART PHD_3 415 483 IPR001965 -
Bach3g01314 1670 MobiDBLite consensus disorder prediction 1320 1337 - -
Bach3g01314 1670 CDD DEXQc_SHPRH 290 689 - -
Bach3g01314 1670 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1450 1627 IPR001650 -
Bach3g01314 1670 Pfam SNF2-related domain 293 785 IPR000330 GO:0005524|GO:0140658
Bach3g01314 1670 Gene3D - 483 710 IPR038718 -
Bach3g01314 1670 MobiDBLite consensus disorder prediction 1 43 - -
Bach3g01314 1670 SUPERFAMILY RING/U-box 1351 1405 - -
Bach3g01314 1670 MobiDBLite consensus disorder prediction 1635 1654 - -
Bach3g01314 1670 Pfam Helicase conserved C-terminal domain 1449 1576 IPR001650 -
Bach3g01314 1670 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 402 482 IPR013083 -
Bach3g01314 1670 MobiDBLite consensus disorder prediction 24 43 - -
Bach3g01314 1670 SMART ultradead3 286 658 IPR014001 -
Bach3g01314 1670 Coils Coil 1018 1038 - -
Bach3g01314 1670 Gene3D - 347 397 IPR038718 -
Bach3g01314 1670 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 595 1613 IPR027417 -
Bach3g01314 1670 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 276 688 IPR027417 -
Bach3g01314 1670 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1339 1411 IPR013083 -
Bach3g01314 1670 Gene3D - 1412 1642 IPR027417 -
Bach3g01314 1670 MobiDBLite consensus disorder prediction 1318 1337 - -
Bach3g01314 1670 Pfam Zinc finger, C3HC4 type (RING finger) 1357 1400 IPR018957 GO:0046872
Bach3g01314 1670 SMART ring_2 1357 1400 IPR001841 -
Bach3g01314 1670 CDD SF2_C_SNF 1444 1587 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach3g01314 Bach-Chr3 22856376 22867583 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach3g01314 490 783 RAD5 or RAD16-like Gene Family AT5G22750 31.438 1.31e-36 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Bach3g01314 SNF2_N 3.5e-85 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach3g01314 K15710 - gmx:100776659 2562.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bach3g01314 3 22856376 22867583 Bach3g01314 3 22856376 22867583 ECH