Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach3g01236 ATGGAAGAAGCTCTTTCTGCGATGATCGCCTCAGGCTTTTCACCAGCTGGGTCTTTGATAGATTCATTGATTCATATCTCCAATGAAGTTGCCTCCATTGAAAAGTTCCCTTGTGTACACGCTAGGAATGTTTCATCCATGATAAGGAGGGTCAAGCTTCTTTCTTCTTTGTTCGGTGATATTCAAGAAACAGATACCCCACTTCCTCCTTCTTCAATCCTTTGTTTCACAGAGCTCTTCTCTGTGATTAGAAGAGTGAAGCTTTTGAGTCAAGAGTGCAAGGATGGCAGCTCTCTTTGGGGTCTGATCCAGTTAGAGTTCATTTCCAACAAATTTTTTGTGCTGGTGAAAGAGATGGGAAGTGCTCTTGATATCCTTCCTCTGAGCTTGCTTAATATAACATCAGATGTAAGAGAACAAGCGGAGCTTCTGCACAGACAGACAAAAAGGGTTGAGTTGTTTGTTGACCCTCGAGAGCTTCAAAGAAGAGAACAGCTTCTACAAGAAATGGCCAACAATAATGTACAAAACAAGAAGAACAAGGGCTATGTTGACTTTGGGAAAGTGCAAGAAATATTAAGCAGCATCGGTTTGAGAACTCCTTCGGATTATGATGGAGAAGTATCAAAGCTAGAGGCCGAAGCTCAGAAACAAGCAGGCACGGGGGGACTAATCGTTGTCTCCCACATAAACAATCTCATAACTCTGGTTACATACTCCAAATCCATGATATTCAGAGATAGAGAAGATGAAAGAGACAAAGAAGAATGTAAGCCATTATCTGCATTTCTGTCTAAACCCAATGATACTTCTTCATCTTCTCAGTCTGTGATACCTAATATTCCTGATGAATTTCGTTGCCCAATTTCACTTGACTTAATGAGAGACCCAGTGATTGTACCATCTGGGCACACTTATGATCGTATTTCCATTGCACAATGGATCAACTCAGGTCATCACACTTGTCCCAAAAGTGGGCAAAGGTTAATTCACACAGCTCTAATACCCAACTATGCATTGAAGAGTCTTGTCCAGCAGTGGTGCCATGAAAATAATGTCCCATTGAATGAGCCTACGACATCGTTTTCCTCAGCCTCCGAGGGAAACAATAGAAACAATAATTTGGGCAAGAATGCTGTTGATCATATTTCTGCAAATAAAGCGGCTGCAGATGCTGTGAAAATGACTGCAGAGTTTCTAGTTGGGAAATTAGCAACTGGGTCACCTGATATCCAGAGGCAGGCTGCATATGAACTGAGATTACTTGCGAAAACTGGTATGGATAATAGAAGAATTATCGCTGAGGCAGGGGCAATTCCTTTTCTAATGACACTACTTGGTTCTGATGATCCAAGAATCCAAGAACATGCAGTCACAGCCTTCTTTAACCTTTCCATCTTTGATAACAACAAGCTTTTGATCATGGCATCCGGAGCAATTGACAACATCGTGGAAGTACTTGAATTGGGAAAAACGATGGAAGCAAGAGAAAATGCAGCAGCAGCAATCTTTAGCCTGTCAATGGTAGATGACTTTAAAGTAACAATTGGAGCTCGTCCAAGGGCCATACCTGCCTTAGTTGGACTACTGAGAGAAGGCACACATATTGGGAAAAGAGATGCTGCAGCTGCACTTTTCAATCTCGCAGTTTACAATCCAAACAAGGTAAATATCGTTTATGCTGGGGCAGTTCCTTTGCTTATAGACTTGCTGATGGATGATCAAGCTGGCATAACAGATGATGCCCTGGCAGTGCTTGCCTTGCTTCTGGGTTGCTCTCAAGGCCTGGAACAAATAAAGAATAGCAAAGTATTGGTGCCTCTTCTTATTGATCTTTTAAGATTTGGGTCAGCTAAAGGGAAGGAGAATTCTATAACGCTGTTACTAGGATTATGCAAAGAAGAAGGTGAGCTAGTGGCAAGGCGTCTCTTGGCCAATCCGCGAAGTATCCCTTCTCTTCAAAGCTTGGCTGTTGATGGTTCATTGAGAGCTCGTAGAAAGGCTGATGCACTGCTTAGACTGCTTAATAGGTGCTGCTCTCAACCTCATCATTCACTTTGA 2061 0.4236 MEEALSAMIASGFSPAGSLIDSLIHISNEVASIEKFPCVHARNVSSMIRRVKLLSSLFGDIQETDTPLPPSSILCFTELFSVIRRVKLLSQECKDGSSLWGLIQLEFISNKFFVLVKEMGSALDILPLSLLNITSDVREQAELLHRQTKRVELFVDPRELQRREQLLQEMANNNVQNKKNKGYVDFGKVQEILSSIGLRTPSDYDGEVSKLEAEAQKQAGTGGLIVVSHINNLITLVTYSKSMIFRDREDERDKEECKPLSAFLSKPNDTSSSSQSVIPNIPDEFRCPISLDLMRDPVIVPSGHTYDRISIAQWINSGHHTCPKSGQRLIHTALIPNYALKSLVQQWCHENNVPLNEPTTSFSSASEGNNRNNNLGKNAVDHISANKAAADAVKMTAEFLVGKLATGSPDIQRQAAYELRLLAKTGMDNRRIIAEAGAIPFLMTLLGSDDPRIQEHAVTAFFNLSIFDNNKLLIMASGAIDNIVEVLELGKTMEARENAAAAIFSLSMVDDFKVTIGARPRAIPALVGLLREGTHIGKRDAAAALFNLAVYNPNKVNIVYAGAVPLLIDLLMDDQAGITDDALAVLALLLGCSQGLEQIKNSKVLVPLLIDLLRFGSAKGKENSITLLLGLCKEEGELVARRLLANPRSIPSLQSLAVDGSLRARRKADALLRLLNRCCSQPHHSL 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach3g01236 686 Pfam U-box domain 281 351 IPR003613 GO:0004842|GO:0016567
Bach3g01236 686 FunFam RING-type E3 ubiquitin transferase 280 354 - -
Bach3g01236 686 SMART Ubox_2 284 347 IPR003613 GO:0004842|GO:0016567
Bach3g01236 686 SUPERFAMILY RING/U-box 271 355 - -
Bach3g01236 686 SUPERFAMILY ARM repeat 398 675 IPR016024 -
Bach3g01236 686 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 437 479 IPR000225 GO:0005515
Bach3g01236 686 PANTHER U BOX DOMAIN-CONTAINING 42 680 - -
Bach3g01236 686 Pfam Armadillo/beta-catenin-like repeat 428 465 IPR000225 GO:0005515
Bach3g01236 686 CDD RING-Ubox_PUB 282 334 IPR045210 -
Bach3g01236 686 Gene3D - 376 685 IPR011989 -
Bach3g01236 686 FunFam RING-type E3 ubiquitin transferase 492 679 - -
Bach3g01236 686 ProSiteProfiles U-box domain profile. 280 354 IPR003613 GO:0004842|GO:0016567
Bach3g01236 686 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 280 355 IPR013083 -
Bach3g01236 686 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 521 563 IPR000225 GO:0005515
Bach3g01236 686 SMART arm_5 385 424 IPR000225 GO:0005515
Bach3g01236 686 SMART arm_5 592 633 IPR000225 GO:0005515
Bach3g01236 686 SMART arm_5 551 591 IPR000225 GO:0005515
Bach3g01236 686 SMART arm_5 426 466 IPR000225 GO:0005515
Bach3g01236 686 SMART arm_5 467 508 IPR000225 GO:0005515
Bach3g01236 686 SMART arm_5 510 550 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach3g01236 Bach-Chr3 22313883 22315943 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach3g01236 17 681 U-box Gene Family AT3G46510 37.556 2.80e-127 390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach3g01236 - - qsa:O6P43_013820 1043.88