Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bach3g01176 | ATGTCTTTTCTCGGTACCCAACAAAAATGCAAGGCTTGTGAGAAAACGGTCTATCCCGTTGATCAGTTGTCCACAGATGGAGCTGTTTACCATAAGGCTTGCTTTAGGTGTTCTCATTGCAAAGGAACATTAAAGTTAGGCAACTATTCTTCAATGGAAGGTGTTCTCTACTGTAAGCCTCACTATGAGCAGCTCTTCAAGGAGGCTGGCAATTTCAACAAGAACTTCCAGTCACGTATGTCTACTTCTTCTGTGAAGTTAGCTGAGAAGACAACTCCTCAGCTGACAAGGTCACCTAGTAAAGCAGCTAGCATGTTTTCTGGGACACAAGAAAAGTGTGCTACTTGTGGGAAAACTGCATATCCATTGGAGAAGGTAACAGTGGAAGGCCAAGCTTATCACAAATCTTGTTTCAAGTGTTCACATGGTGGCTGTCCCATATCGCCATCAAATTATGCTGCCCTCGAGGGAATTTTGTACTGCAAGCACCATTTCTCCCAACTTTTTAAGGAGAAAGGGAGCTATAATCATCTGATCAAGTCTGCATCAATTAAACGGGCAGCAGCCTCTGTTCCAGAATCTTAGATCTTGCTTCCGTTTGTACCATTTGGTTGGTCTGTCCTGCAAGTGTGTGTGTGTCTTTAACATGAATTGATTCTTTCTTCTTTTCCTTTGTGTGGTGTGCAAATCTTTTTCAGAGTTGGATTTTATTGAATGCCAATTCATTAATTACAATGTGCTTTTGAGGATTTG | 753 | 0.417 | MSFLGTQQKCKACEKTVYPVDQLSTDGAVYHKACFRCSHCKGTLKLGNYSSMEGVLYCKPHYEQLFKEAGNFNKNFQSRMSTSSVKLAEKTTPQLTRSPSKAASMFSGTQEKCATCGKTAYPLEKVTVEGQAYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASIKRAAASVPES | 194 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bach3g01176 | 194 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 139 | 178 | - | - | |
| Bach3g01176 | 194 | PANTHER | OS06G0237300 PROTEIN | 5 | 114 | - | - | |
| Bach3g01176 | 194 | FunFam | LIM domain and actin-binding 1 | 4 | 74 | - | - | |
| Bach3g01176 | 194 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 105 | 138 | - | - | |
| Bach3g01176 | 194 | Gene3D | Cysteine Rich Protein | 107 | 177 | - | - | |
| Bach3g01176 | 194 | Gene3D | Cysteine Rich Protein | 5 | 74 | - | - | |
| Bach3g01176 | 194 | ProSitePatterns | LIM zinc-binding domain signature. | 10 | 44 | IPR001781 | - | |
| Bach3g01176 | 194 | Pfam | LIM domain | 10 | 65 | IPR001781 | - | |
| Bach3g01176 | 194 | Pfam | LIM domain | 113 | 168 | IPR001781 | - | |
| Bach3g01176 | 194 | ProSiteProfiles | LIM domain profile. | 8 | 68 | IPR001781 | - | |
| Bach3g01176 | 194 | CDD | LIM1_SF3 | 6 | 68 | - | - | |
| Bach3g01176 | 194 | ProSiteProfiles | LIM domain profile. | 111 | 171 | IPR001781 | - | |
| Bach3g01176 | 194 | SMART | lim_4 | 9 | 61 | IPR001781 | - | |
| Bach3g01176 | 194 | SMART | lim_4 | 112 | 164 | IPR001781 | - | |
| Bach3g01176 | 194 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 3 | 35 | - | - | |
| Bach3g01176 | 194 | CDD | LIM2_SF3 | 113 | 173 | - | - | |
| Bach3g01176 | 194 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 36 | 76 | - | - | |
| Bach3g01176 | 194 | FunFam | LIM domain and actin-binding 1 | 107 | 177 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Bach3g01176 | Bach-Chr3 | 21902590 | 21904639 | Dispersed/Wgd |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | LIM | Bach3g01176 | LIM | 4.3e-11 | CL0167 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bach3g01176 | K09377 | - | gmx:100809121 | 357.836 |