Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach3g01076 ATGACTAGAAAGAAGGTGAAGCTTCAATTCATAACCAATGACTCTGCCAGGAAAGCCACCTTTAAGAAGAGGAAGAAGGGTCTAATGAAGAAAGTGAGTGAGCTCAGCACCCTGTGTGGCATAGACGCCTGTGCCGTTGTTTATAGCCCTTATGATCCTCAGCCAGAGGTTTGGCCATCAGAAATGGGGGCTCAAAGAGTGCTAACCAGGTTCAGGAGAATGCCTGAACTGGAGCAAAGCAAGAAGATGGTGAATCAAGAGAGCTTTCTGAAGCAGAGGATCTTTAAGGTCAAAGAGCAAGTAAAGAAGCAAAGAAAAGACAATCGAGAGAAAGAAATGTCTAATTTGATGTACCAGTATCTGGGAGCTGGCAAAATTCTACACAACATGAGCATGATTGATCTCAATGATCTGTCATGGATCATGGATCGCAGCATGAAGGAAATTAGTAGGAGAATTGATTTACTGAATAAAGCTCAGGAGAGTCAAAGTGAAGCCACAGTGGCAGCGGCAGCAACACCACCACCACCAACAGTGGCACATGGCATGACGAGGATTGGGGAAAGGCCACAGGTGGAGCAAGGGCAAGGCTTGAACTCAAACGTGGATGCCATGCAAAGGCAGCCATGGTTTATGGATCTGCTCAATCATGGTGGAGAGGAGATGCTGCCATTTGGGGATGCCAATCACCAGAATCCATTTTGGCCAAACAACTTTTTCCCTTGA 726 0.4614 MTRKKVKLQFITNDSARKATFKKRKKGLMKKVSELSTLCGIDACAVVYSPYDPQPEVWPSEMGAQRVLTRFRRMPELEQSKKMVNQESFLKQRIFKVKEQVKKQRKDNREKEMSNLMYQYLGAGKILHNMSMIDLNDLSWIMDRSMKEISRRIDLLNKAQESQSEATVAAAATPPPPTVAHGMTRIGERPQVEQGQGLNSNVDAMQRQPWFMDLLNHGGEEMLPFGDANHQNPFWPNNFFP 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach3g01076 241 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bach3g01076 241 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bach3g01076 241 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Bach3g01076 241 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 173 - -
Bach3g01076 241 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Bach3g01076 241 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Bach3g01076 241 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Bach3g01076 241 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bach3g01076 241 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Bach3g01076 241 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach3g01076 Bach-Chr3 21141604 21142329 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach3g01076 1 180 Type I MADS-box Gene Family AT5G48670 56.216 1.91e-62 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Bach3g01076 SRF-TF 2.6e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach3g01076 - - gmx:100813231 316.62