Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach3g01023 ATGCGCTCCTCTCCTGCTGGTGGCGGGAAAACCCGTACACTTGTTGTAAGACTTACCTTCTTCTATTTGTGGATACAGAAATACTTTGGGTTTTCTGCATTTCGGCCATATCAGGAAGAGGTTATACAAAACATTATTGACAAAAGAGACTGCTTAGTAGTCATGGCTACTGGTAGTGGGAAGTCCTTATGCTATCAGGTACCTCCTTTGGTTGTCAGAAAGACTGGGATAGTAGTGAGCCCGCTTATATCATTAATGCAAGATCAGGTAATGGCTTTGAAAGAAAGGGGTGTCAGAGCTGAGTATCTTGGAAGTGCTCAGACGGATACCACAATCCAGACCAGAGCTGAGAATGGTCAATTTGACATTCTGTTCATGACCCCTGAGAAGGCGTGCTTGATTCCTACCAGCTTTTGGTCCAAGTTGCTCAAGGCAGGAATATGTCTTTTTGCTGTTGATGAGGCACATTGTATATCAGAGTGGGGCCATGACTTCAGGGTGGAATACAAGAAGTTGGATAAGTTACGTGGTGTTCTATTAGATGTCCCTTTTGTTGGCTTAACTGCAACTGCTACTGAAAAGGTTCGAGTTGACATCATCAATTCCCTGAAACTGGACAATCCTTTTGTCTCTGTGGGTTCATTTGATCGTACAAATCTTTTTTATGGTGTCAAGCCATTTAAGCGAGGACAACATTTTTTGGATGAGCTTGTGAGAGAAATTTTGAGATTTGTTGCTACTAACGGATCAACTATTGTTTACTGCACAACAATCAAAGATGTGGAACAGGTATTCCAGTCACTTTTGGAAGCAGGTATTGAGGCTGGAATTTATCATGGCCAAATGGATAGAAAAGCTCGTGAAGAATCTCATAGATTATTTGTTAGAGATGAAATTCAAGTCATGGTTGCGACAATTGCTTTTGGAATGGGTATAGATAAACCAAACATAAGACAGGTGATACACTATGGTTGCCCTAAGAGTATAGAGTCCTACTACCAGGAAAGTGGGCGATGTGGTAGAGATGGTATAGCCTCTGTCTGTTGGCTCTATTACACAAGAAGTGACTTTGCAAAGGGCGACTTCTATTGTAGAGAAATTCAATCAGTAGACCAAAGAAGAGCTATTTGGAAGTCATTGGAGGCTGCTGAACACTATTGCTTGTTGACAACTTGTAGAAGAAAGTTCTTGCTTGAATACTTTGGGGAAAAATCTTCAACTGATAGATGTGGAAATTGTGATAACTGCACTACCTCAAAAAAGGAGCGAGACATGTCAAGAGAAGCATTTCTTCTAATGGCTTGCATTCAATCATGCAAGGGAAAATGGGGCCTTAATATGCCCATTGACATCTTGCGTGGGTCTCGAGCCAAGAAAATTATTGATGCTCAGTTTGACAAGCTTCCACTTCATGGACTTGGGAAAGCTTACACTGCGAATTGGTGGAAAGCACTTGGACAACGGTTGAAATCTCATGGTTTTCTGAAGGAGACTGTCAATGATGTGTACAAAGTTATAAGTGTCAGTTCAGAAGGAGACAAATTTTTGGCCTCTTCTACACCAGATTATCAACCACCCTTAGTTTTGTCAGTGACTACTGAAATGGTTGATGAAGAGAAAAATACGACTGAACAAGAAGAAACCAAAATTTTAGCTACTTCAGAATTTGAGGGTTTTTCAGAGGCTGAGAGACAGCTCTACCAAATGCTTTTGGACGAGAGATTGAAGCTTGCAAGAAGCATTGGGACAGCTCCATATGCCATATGTGGAGATCAAACAATCAAGAAAATTGCATTGACAAGACCATCTACAAAAGCAAGGCTAGCAAACATTGATGGTGTGAATCAGCACCTAGTAACAAGACATGGGGATCATTTTCTTCAAGTTATCCTGCAACTGTCACAACAATCAAACCTTACTTTGGATGGGGAAGCAAGTTTGCAAACTACCACCGTAGGAAAAGTGTCTCCACTAACCAATGTACGAAAGAAGTTGACGCCAGCAAGGCATGAAGCATGGAAAATGTGGCATGAAGATGGTCTTTCTATTCAGATGATTGCTAACCATGCAGGTAGAGCAGCTCCTATAAAAGAACAAACTGTTGCTGAATACCTTCTGGAAGCTGCCCAAGAAGGACTGCCTTTTGATTGGACTAGATTCTGTGAGATGATTGAACTGACACATGAGATCATCTCGAAAATTCAGGGTGCTATTTTAAAGGTTGGCTCTGCGGAGAAACTGAAGCCCATAAAAAATGAATTACCAGAAGATATAAGTTATGCACACATCAAGACTTATTTGACAATGCAAAGCTTAGGAAAGTCTCCTGAAGCTGAAGGTGGAGGCCACGCGACAGAAAAAGATAGTCAAAAGCTTCTTCCACTAGTCTGTGACGAGGAATTGTCAAAGAAACGCCAGAAAGTCAGTGAACCTGAGGAAGGAAATCCAATCAAACAGAAGGCAACAGAGAGTTCCCTAGTAGAGTGGCTCAAGAACCATGATGAAGGGGTTACACTGCTTGATATTCTGCAGCACTTCAATGGGTCCAGTGAAGATTCTGTGGTTGAACTACTGAATTGCCTTGAGAGTGACTTTCTGGTATATAAAAAGAACAGCGTGTACAGGCTTATGTAG 2634 0.415 MRSSPAGGGKTRTLVVRLTFFYLWIQKYFGFSAFRPYQEEVIQNIIDKRDCLVVMATGSGKSLCYQVPPLVVRKTGIVVSPLISLMQDQVMALKERGVRAEYLGSAQTDTTIQTRAENGQFDILFMTPEKACLIPTSFWSKLLKAGICLFAVDEAHCISEWGHDFRVEYKKLDKLRGVLLDVPFVGLTATATEKVRVDIINSLKLDNPFVSVGSFDRTNLFYGVKPFKRGQHFLDELVREILRFVATNGSTIVYCTTIKDVEQVFQSLLEAGIEAGIYHGQMDRKAREESHRLFVRDEIQVMVATIAFGMGIDKPNIRQVIHYGCPKSIESYYQESGRCGRDGIASVCWLYYTRSDFAKGDFYCREIQSVDQRRAIWKSLEAAEHYCLLTTCRRKFLLEYFGEKSSTDRCGNCDNCTTSKKERDMSREAFLLMACIQSCKGKWGLNMPIDILRGSRAKKIIDAQFDKLPLHGLGKAYTANWWKALGQRLKSHGFLKETVNDVYKVISVSSEGDKFLASSTPDYQPPLVLSVTTEMVDEEKNTTEQEETKILATSEFEGFSEAERQLYQMLLDERLKLARSIGTAPYAICGDQTIKKIALTRPSTKARLANIDGVNQHLVTRHGDHFLQVILQLSQQSNLTLDGEASLQTTTVGKVSPLTNVRKKLTPARHEAWKMWHEDGLSIQMIANHAGRAAPIKEQTVAEYLLEAAQEGLPFDWTRFCEMIELTHEIISKIQGAILKVGSAEKLKPIKNELPEDISYAHIKTYLTMQSLGKSPEAEGGGHATEKDSQKLLPLVCDEELSKKRQKVSEPEEGNPIKQKATESSLVEWLKNHDEGVTLLDILQHFNGSSEDSVVELLNCLESDFLVYKKNSVYRLM 877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach3g01023 877 ProSiteProfiles HRDC domain profile. 560 640 IPR002121 GO:0003676
Bach3g01023 877 PANTHER DNA HELICASE RECQ FAMILY MEMBER 26 681 - -
Bach3g01023 877 Pfam DEAD/DEAH box helicase 36 195 IPR011545 GO:0003676|GO:0005524
Bach3g01023 877 SMART hrdc7 560 640 IPR002121 GO:0003676
Bach3g01023 877 FunFam ATP-dependent DNA helicase 217 418 - -
Bach3g01023 877 SMART ultradead3 30 225 IPR014001 -
Bach3g01023 877 SMART helicmild6 262 343 IPR001650 -
Bach3g01023 877 FunFam ATP-dependent DNA helicase 21 215 - -
Bach3g01023 877 SUPERFAMILY "Winged helix" DNA-binding domain 415 521 IPR036390 -
Bach3g01023 877 Pfam RQC domain 421 517 IPR018982 GO:0006260|GO:0006281|GO:0043138
Bach3g01023 877 FunFam ATP-dependent DNA helicase 419 543 - -
Bach3g01023 877 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 75 357 IPR027417 -
Bach3g01023 877 FunFam ATP-dependent DNA helicase 556 646 - -
Bach3g01023 877 Pfam HRDC domain 564 630 IPR002121 GO:0003676
Bach3g01023 877 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 237 388 IPR001650 -
Bach3g01023 877 NCBIfam RecQ family ATP-dependent DNA helicase 25 475 IPR004589 GO:0004386|GO:0006310
Bach3g01023 877 Pfam RecQ zinc-binding 357 417 IPR032284 -
Bach3g01023 877 Pfam Helix-turn-helix domain 670 767 IPR029491 -
Bach3g01023 877 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 42 209 IPR014001 -
Bach3g01023 877 SMART RQC_2 424 528 IPR018982 GO:0006260|GO:0006281|GO:0043138
Bach3g01023 877 CDD DEXHc_RecQ 25 216 - -
Bach3g01023 877 SUPERFAMILY HRDC-like 559 641 IPR010997 GO:0000166|GO:0044237
Bach3g01023 877 Pfam Helicase conserved C-terminal domain 238 342 IPR001650 -
Bach3g01023 877 CDD SF2_C_RecQ 217 352 - -
Bach3g01023 877 Gene3D - 20 215 IPR027417 -
Bach3g01023 877 Gene3D - 419 544 IPR036388 -
Bach3g01023 877 Gene3D - 217 418 IPR027417 -
Bach3g01023 877 Gene3D HRDC domain 559 643 IPR044876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach3g01023 Bach-Chr3 20763906 20771592 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach3g01023 252 359 Eukaryotic Initiation Factors Gene Family AT3G19760 26.852 1.65e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach3g01023 K03654 - gmx:100797777 1301.96