LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bach3g01009	ATGTCGTATGTGCCTCCTCACCTCAGGAACTCGAGCTCAACCACTGTTGCTACCAGAACCTTATCTCTAACCCTGGACAATGATCATCATAGCAAGCTTGATTTCCCCTCAAACTCTCACTTGAAGGACTCTTCCACTGCCAATTCTCTCTCCACTTTTTCCAATGCCTCTCGCCGGAGTTCCGGTAATTTTACTCCGTCGAGGATCATCGCTGTTCCCGACCCCGTTTTCCCTCCGTGGCAACCGTCCGAACGTGTGTCTCGTATGAAGCCGGAGCAGATCGAAGAAGTCCGCCTACGGCTTAATGTTGATGTTACTGTTGCATTTGACTCGCTTCCCGCACCTGCACCAATAGAATCTTTTATGGATATGTGTTTGCACCCTAGTATAATGAAGGATATTGCATCTCACGAATATACCAGGCCAACTTCTATCCAGGCACAGGCTATGCCAATTGCTCTTAGTGGAAGAGATCTACTGGGTTGTGCAGAAACTGGTAGTGGAAAAACTGTAGCCTTCTCCATTCCTATGATACAGCATTGCTTGGCTCAACCTCCAATTCGACGTGGCGATGGTCCTCTCGCTTTGGTTTTGGCTCCTACTAGAGAGCTTGCTCAACAAATAGAAAAAGAGGTTAAAGCATTTAGTAAATCACTTGGTTCATTAAAAACTGCAATAGTTGTGGGTGGAACTAACATCAGCGAGCAGAGGTCTGAGCTACGGGCAGGAGTTGACTTAGTGGTTGCAACCCCTGGAAGATTTATTGATCACTTACAACAAGGCAACACATCCCTTTCTAGAATTTCATTTGTTGTTCTAGACGAGGCTGATAGAATGCTTGATATGGGTTTCGAACCACAGATTAGAGAGGTAATGAGAAATCTTCCAGAGGGGCATCAAACTTTGCTATTTAGTGCAACTATGCCTGTAGAGATTGAAGCATTAGCTAAGGAGTACTTAACTAGCCCAGTGCAAGTGAACGTGGGAAAAGTGAGTAGCCCAACAACAAATGTTTCTCAAACTCTTGTGAAGTTTTCTGAAAATGAGAAGATTGATCGGCTTCTAGGTTTGCTTGTAGAGGACGCATCACAGGCTGAAAAATGTGGTCATCCATTTCCATTAACAATTGTGTTTGTGGAGAGAAAGACAAGGTGTGATGAAGTTGCTGAAGCATTGGTAGCACAAGGGTTGTCTGCAGTTTCTCTTCATGGTGGCCGCAGTCAGAGTGAAAGGGAGGCTGCTTTGCATGATTTTCGGAGTGGTTCTACTAGCATTTTGGTTGCCACCGATGTTGCATCACGGGGCTTGGACGTTACAGGAGTGTCTCATGTTATAAACCTAGATCTTCCCAAGACCATGGAAGATTATGTACACCGGATTGGAAGGACGGGACGTGCTGGATCAACAGGACAAGCTACTTCTTTTTGCACTGATCGTGATATGTTTCTTGTTGCAAACATAAAGAAAGCAATAGCTGACGCTGGATCTGGGAATGCTGTGGCATTTGCAACTGGAAAGATGGCTAGAAGGAAGGAGAAAGAAGCTGCAGCGGCGCAAAAAGAGGCAAAGAATGTTTTATCCAAGCACTTGGGATTGGGCGGTGCTTCCATCAACATTGAGGATAAGTACAAGTTCATGATTACTGCCTCAGGCATTAAAAGAGAGGGCGCAGCAGATAGTGCTTGGGATGATTAATCAAGTGTCTGCAGCGACAATGTTTAAGGCTCCAAGTGACTTATTCTTTATTGCTTCAATTGCTGCACCACTCTTCCCCGTGCCTGCCCTCGTCTTACGAGTATGATTGGTTGTTTGTCGTGCACCTTGATATGTTGTGCTGGCTGGAATGGAGTGCGTATAGGTTTGTTGCTTCTGACTTGGGACTTGATGTGCAAAGCTGCTGAAGATAGGCAAGTATCTTGTAATTTGTGAATCTGTCTTGTCCTTTTACACCTTTCTTGTAGCTAGCATACTCGGTAACAAGGTAGCCTTCTAGACACGTTTAGTTTGTAGAGTTGGCATTAGAGGTAATGCAAATTATGTATCCTAGAAAACAAGTTTCCTTTAAATTTATGCTGCATCAAATATAAAAATTCCTCAAGTTA	2102	0.4439	MSYVPPHLRNSSSTTVATRTLSLTLDNDHHSKLDFPSNSHLKDSSTANSLSTFSNASRRSSGNFTPSRIIAVPDPVFPPWQPSERVSRMKPEQIEEVRLRLNVDVTVAFDSLPAPAPIESFMDMCLHPSIMKDIASHEYTRPTSIQAQAMPIALSGRDLLGCAETGSGKTVAFSIPMIQHCLAQPPIRRGDGPLALVLAPTRELAQQIEKEVKAFSKSLGSLKTAIVVGGTNISEQRSELRAGVDLVVATPGRFIDHLQQGNTSLSRISFVVLDEADRMLDMGFEPQIREVMRNLPEGHQTLLFSATMPVEIEALAKEYLTSPVQVNVGKVSSPTTNVSQTLVKFSENEKIDRLLGLLVEDASQAEKCGHPFPLTIVFVERKTRCDEVAEALVAQGLSAVSLHGGRSQSEREAALHDFRSGSTSILVATDVASRGLDVTGVSHVINLDLPKTMEDYVHRIGRTGRAGSTGQATSFCTDRDMFLVANIKKAIADAGSGNAVAFATGKMARRKEKEAAAAQKEAKNVLSKHLGLGGASINIEDKYKFMITASGIKREGAADSAWDD	564

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bach3g01009	564	Pfam	Helicase conserved C-terminal domain	370	467	IPR001650	-
	Bach3g01009	564	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	150	326	IPR014001	-
	Bach3g01009	564	SMART	helicmild6	386	467	IPR001650	-
	Bach3g01009	564	ProSitePatterns	DEAD-box subfamily ATP-dependent helicases signature.	272	280	IPR000629	-
	Bach3g01009	564	SMART	ultradead3	138	341	IPR014001	-
	Bach3g01009	564	FunFam	probable ATP-dependent RNA helicase DDX17	80	329	-	-
	Bach3g01009	564	CDD	SF2_C_DEAD	338	476	-	-
	Bach3g01009	564	CDD	DEADc	130	326	-	-
	Bach3g01009	564	Gene3D	-	332	527	IPR027417	-
	Bach3g01009	564	PANTHER	ATP-DEPENDENT RNA HELICASE RHLE-RELATED	115	516	-	-
	Bach3g01009	564	Gene3D	-	80	330	IPR027417	-
	Bach3g01009	564	MobiDBLite	consensus disorder prediction	36	66	-	-
	Bach3g01009	564	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	350	508	IPR001650	-
	Bach3g01009	564	Pfam	DEAD/DEAH box helicase	143	313	IPR011545	GO:0003676\|GO:0005524
	Bach3g01009	564	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	119	147	IPR014014	GO:0003724
	Bach3g01009	564	MobiDBLite	consensus disorder prediction	38	66	-	-
	Bach3g01009	564	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	191	486	IPR027417	-
	Bach3g01009	564	Coils	Coil	508	528	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bach3g01009	Bach-Chr3	20561179	20568599	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bach3g01009	119	489	Eukaryotic Initiation Factors Gene Family	AT1G72730	35.294	3.04e-68	224

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bach3g01009	K12823		-	qsa:O6P43_020458	910.983