Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach3g01006 ATGGACCCTGGTCGCTATGGTCTACATCAAGGCTGGGATAATAACAGCGCTCTGGAGGGTTATGGTGCCGTACATGAGCCAAAATTCCGGGTTGGTGGTGGTGGTGCATATGATGAAAGAAGGTATATAGATGAAAGGTATTCAAGGGATAGTATCTACCAGAGGAATGCTTTCCCCCGTGATGTTTTGGAGCGGGAGGCCTATCCACCACCAGGGCCTGCGGTTGGGCATTGGGGTCAATCCAAAAGGAGAGGTTATGATGAAGATTATCCACTGGACCGGGATTCTGGACGTCTTCAGAGGCCTTATTACGATTCATATCATCAGATCGATGCTTTTAGAGATCGTGATATTGACACATATGCAGAATTTGATAAGTTTCATGATGGCTATGCTGGCATTGAAAACTATGGTGATCGAGGATATGATAAACCTCCTAGGTTTGGGGGACATGACCGGGATGATTATGCTTATGATGATTATGGCTACAGGTCCCGTGTTTCACATCATCATAGGGAGGATAGCCGTGAGAGGGATTACAATCACGATCGACATAGTTATGATTCTGATTATGAAAGAGGTAGAAGAGATAGCAATAAGAGGCGGCATGAATCCCGTGATAGAGACCGTGACAAAAGATGTCTTAGTCGAGAAAAAGATCTGAGTCCACATAGGAGGCACGGGCGATCCCATTCCCGGTCACGTTCTCAGTCCCGTTCCCATTCCCATTCTCGGTCCCGTTCCCGATCTCATGGTTATGATGATCGGCCAAGATCAAGGTCCCCTTGCAGTCGAAGCCATGGCCGAAGTTACCGAGAAGACAGTTATGCTGACAGTCGATATGAGAGAAGTGAAAAGCGTAGGGATCGTGAGGAGAAACATCAGAGGGAGCATTATTCTGTGGCTCCATCTGCCACTGTTGTTGTGAAAGGTCTTTCACAGAAGACAACTGAAGAAGATCTATACCAGATCCTTGCTGAATGGGGACCCCTTCGCCATGTTCGTGTTATAAAGGAAAGAAATTCCGGCATTTCTCGTGGATTTGCATTTATTGACTTTCCTTCTGTGGGAGCTGCACAAACAATGATGGACAAGCTTGGAGATGATGGTCTTGTTATTGATGGGAGAAAGCTTTTCTTTGAATATAGTAGTAAGCCAACTGGAGGTCTAGGTGGTCCTTTTGGTCAAGAGGGAGCTATGAAGTCAGGTCATAATCATAAACACATTACAGTACCATCTGATTGGATGTGCACTATATGTGGCTACATCAATTTTGCACGGAGGACATCCTGCTACCAGTGTAATGAGCCACGAACTGAGGATGCTCCAGCAGCAGATATCACATTATCAAATCCAGCAGCCTTAGGAAAGAAAGGATTGGAAGCAGGTCCCACTCATGTTTTGGTTGTTCGTGGATTGGATGAAAATGCCGATGAGGAAATGCTTCGCTATGAGTTTTCCAAGCATGCTCCAATTAAGGATCTGCGTCTTGTGAGGGACAAATTTACTCATGTCTCAAGGGGTTTTGCATTTGTGCATTTTTATTCGGTGGAGGATGCTACTAAATCTCTTGAAGCAACAAATGGGACAACGCTTGAAAAGAATGGACAGATTCTGAGAGTGGCATATGCTAAAAGTATCTTGGGTCCTGGATCAGGAACATCAGGACCTTCCCAATCAAGCAGTCTTGCAGCTGCTGCTATTGAGGCTGCAACATTTGCTCAACAGTATGATGCTGTTGGATGGGCTCCAAGAGAATACAATCCTGATGACAAACAATCTACTGGACAAGTGCAAGCTGGCCCAGAAATTGCAGTTCAGAAGGATGGCCAGGCTCCTCAATCTGGCTTTGTTTGGGATGAAGCTTCTGGTTATTACTATGATGCTGCGTCTGGGTTTTACTATGATGGGAATTCTGGTCTTTATTATGATGGAAATAATGGGATTTGGTATTCATATGACCAACAAACTCAGCAATACATCCCTTACTCTGATCAAAATGAGAGTAAAATCCCTAATAACCAATCTGAACCTTCCAAGGCATCTGATGGTTCCAGCAGTAAAAAGGTCATTTCTGCACCAGCTACTACTGTTTCATCAATTGAGAAGCCGGCTTCATTGCCAGATGCTGTCCAGGCTGCTGCAACAGCTGCCTTAGCTGCAGAAAAGAAAGAAAAAGAAAAATCAAAGGAGATAAAGCTTGCGTCAAAAAGCAGTATTCTGGCTAACAAGAAGAAAATGAATAATGTCTTGACGATGTGGAAACAGAGGAGTCATGAGGGACAGGCTACTCGTGTGGCTCTGGAGGACAATACACCATCTGTATCAGCTGATGATAGGTCCTATTTTTCCGGGAATTCCACAAAGAGTAAGTTCAGAACTGAGACTTCAGCTGCATGGGAGAATAATACAGGCAGTCCTGGAATTCCCACTGCATCGGCTGCCCAGACTATTGCTTCTGATTCTCAGGTCCAGCCACGGCCTGTGAGTAATAGTCTTGGGGGTACTTTGATGGGGGTTATCAGGGGCTCTGGAAGAGGGGTTGTTAAATCAGATGCTTCTTATTCAGGATCTTTAGCTGCAGCTACTGGTACTTCAAGTTTGCCAACAACAAATTCAGATGCACTGACTGGTGCAGCTCCCTATAGGACAGATGCTTCTGCGCTGGGTTCATATACACCACCTGTGTCCAGTGGAAGTGGCAGAAGAAGGTTTTCGGAAATGCCTCATTCTGCTTCAACCCAGAAGGAACAACCTCAAAATACCTACAGGGATCGTGCAGCAGAGAGGAGAAATTTGTATGGCTCATCATCTTCTCTTGGGGATGATTTGGCTGACCTTGGACCTGGGGATTCAAATCGAGATTTTGCATCAAGGAAGGGTGATCCAATGCCTTTTCCTCCTGGGGTTGGTGGAGGACGCGTTGTTGGAGATGCCAACCTTGATACTTTTGAGGTGATCACAGCAGACAAAGCAATTGATGAGAACAATGTTGGCAATCGGATGCTTCGCAACATGGGATGGCATGAAGGATTGGGACTAGGGAAGGATGGAAGTGGAATGATAGAGCCCGTCCAGGCGCAAGCCATGGATAGTAGAGCAGGACTTGGGAGTCAACAGAAGAAACTGGATCCTAGCCTTGAGGTGCAGGCAGGGGATAGTTACAAGACGCTCATTCATAAGAAAGCACTTGCCAGGTTTCGGGAAATGTCTTAG 3216 0.4574 MDPGRYGLHQGWDNNSALEGYGAVHEPKFRVGGGGAYDERRYIDERYSRDSIYQRNAFPRDVLEREAYPPPGPAVGHWGQSKRRGYDEDYPLDRDSGRLQRPYYDSYHQIDAFRDRDIDTYAEFDKFHDGYAGIENYGDRGYDKPPRFGGHDRDDYAYDDYGYRSRVSHHHREDSRERDYNHDRHSYDSDYERGRRDSNKRRHESRDRDRDKRCLSREKDLSPHRRHGRSHSRSRSQSRSHSHSRSRSRSHGYDDRPRSRSPCSRSHGRSYREDSYADSRYERSEKRRDREEKHQREHYSVAPSATVVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERNSGISRGFAFIDFPSVGAAQTMMDKLGDDGLVIDGRKLFFEYSSKPTGGLGGPFGQEGAMKSGHNHKHITVPSDWMCTICGYINFARRTSCYQCNEPRTEDAPAADITLSNPAALGKKGLEAGPTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKSLEATNGTTLEKNGQILRVAYAKSILGPGSGTSGPSQSSSLAAAAIEAATFAQQYDAVGWAPREYNPDDKQSTGQVQAGPEIAVQKDGQAPQSGFVWDEASGYYYDAASGFYYDGNSGLYYDGNNGIWYSYDQQTQQYIPYSDQNESKIPNNQSEPSKASDGSSSKKVISAPATTVSSIEKPASLPDAVQAAATAALAAEKKEKEKSKEIKLASKSSILANKKKMNNVLTMWKQRSHEGQATRVALEDNTPSVSADDRSYFSGNSTKSKFRTETSAAWENNTGSPGIPTASAAQTIASDSQVQPRPVSNSLGGTLMGVIRGSGRGVVKSDASYSGSLAAATGTSSLPTTNSDALTGAAPYRTDASALGSYTPPVSSGSGRRRFSEMPHSASTQKEQPQNTYRDRAAERRNLYGSSSSLGDDLADLGPGDSNRDFASRKGDPMPFPPGVGGGRVVGDANLDTFEVITADKAIDENNVGNRMLRNMGWHEGLGLGKDGSGMIEPVQAQAMDSRAGLGSQQKKLDPSLEVQAGDSYKTLIHKKALARFREMS 1071
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach3g01006 1071 CDD RRM1_RRM2_RBM5_like 464 544 - -
Bach3g01006 1071 MobiDBLite consensus disorder prediction 665 691 - -
Bach3g01006 1071 Gene3D - 269 409 IPR012677 -
Bach3g01006 1071 MobiDBLite consensus disorder prediction 167 302 - -
Bach3g01006 1071 Pfam G-patch domain 996 1037 IPR000467 GO:0003676
Bach3g01006 1071 SUPERFAMILY RNA-binding domain, RBD 464 554 IPR035979 GO:0003676
Bach3g01006 1071 PANTHER RNA-BINDING PROTEIN 202 1068 - -
Bach3g01006 1071 MobiDBLite consensus disorder prediction 885 968 - -
Bach3g01006 1071 MobiDBLite consensus disorder prediction 81 99 - -
Bach3g01006 1071 MobiDBLite consensus disorder prediction 64 99 - -
Bach3g01006 1071 SUPERFAMILY RNA-binding domain, RBD 301 398 IPR035979 GO:0003676
Bach3g01006 1071 MobiDBLite consensus disorder prediction 247 299 - -
Bach3g01006 1071 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 307 376 IPR000504 GO:0003723
Bach3g01006 1071 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 468 534 IPR000504 GO:0003723
Bach3g01006 1071 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 305 385 IPR000504 GO:0003723
Bach3g01006 1071 CDD OCRE_SUA_like 612 663 IPR035623 -
Bach3g01006 1071 MobiDBLite consensus disorder prediction 226 246 - -
Bach3g01006 1071 Gene3D - 410 441 - -
Bach3g01006 1071 ProSiteProfiles Zinc finger RanBP2 type profile. 411 440 IPR001876 -
Bach3g01006 1071 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 466 546 IPR000504 GO:0003723
Bach3g01006 1071 ProSiteProfiles G-patch domain profile. 995 1041 IPR000467 GO:0003676
Bach3g01006 1071 SUPERFAMILY Ran binding protein zinc finger-like 405 441 IPR036443 -
Bach3g01006 1071 Pfam OCRE domain 614 664 IPR041591 -
Bach3g01006 1071 Gene3D - 453 570 IPR012677 -
Bach3g01006 1071 ProSitePatterns Zinc finger RanBP2-type signature. 415 434 IPR001876 -
Bach3g01006 1071 SMART G-patch_5 993 1039 IPR000467 GO:0003676
Bach3g01006 1071 MobiDBLite consensus disorder prediction 907 921 - -
Bach3g01006 1071 SMART zf_4 413 437 IPR001876 -
Bach3g01006 1071 SMART rrm1_1 467 542 IPR000504 GO:0003723
Bach3g01006 1071 SMART rrm1_1 306 381 IPR000504 GO:0003723
Bach3g01006 1071 MobiDBLite consensus disorder prediction 167 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach3g01006 Bach-Chr3 20521169 20528252 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach3g01006 974 1040 C2H2 Transcription Factor Family AT5G26610 41.791 3.31e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach3g01006 K13094 - gmx:100787998 1585.08