Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach3g00915 ATGGAATCTGATCTTGGCAAGCTCTTCATTGGGGGAATTTCCTGGGATACTGATGAAGAGCGTCTCAAAGAATATTTTGGGAAGTATGGAGAGGTGATAGAGGCCGTGATCATGAGAGATCGCACAACAGGTCGTGCTCGTGGTTTTGGTTTTGTTGTCTTTGCTGATCCTGCTGTTGCTGAAAGAGTCATTATGGATAAGCACATAATTGATGGCCGCACAGTTGAAGCGAAGAAAGCTGTTCCCAGGGATGATCATCATACTATTAATCGACAATCTGGTGGTGTCCATGGCTCTCCTGGTCCTGGACGCACAAAAAAGATTTTCGTTGGAGGTTTACCATCAACTATCACTGAAAGTGACTTTAAGAAGTATTTTGACCAGTTCGGTACAATTACTGATGTTGTAGTAATGTATGATCACAACACTCAGAGGCCAAGAGGATTTGGCTTCATCACTTATGACTCAGAAGAAGCTGTGGACAGAGTTCTTTATAAAACATTTCATGAACTCAACGGAAAGATGGTTGAGGTCAAGAGGGCAGTTCCCAAAGAGCTTTCCCCTGGGCTGAACCGGAGCCCATTGATAGGATATAACTATGGTTTGGGTAGGGCCAACAGCTACCTGAACAGTTGTGCTCAGGGTTTTAATATGAGTCCTGTTGGAGGCTATGGAGTCAGGATGGATGGTAGGTTTAGTCCAGTTACTAGTGGGAGAAGTGGGTTTTCCCCATTTGGCACAACTGCTTATGGGATGGGAGTGAATTTGGAGGCAGGATTGAACCCAAGCTATGGTAGCACTTCCAACTATGGGAGCAATCTAGGATATGGTCGCATATTTAGTCCTTTCTATAATGGCAACTCAAGCAGGTATACTACTCCCATTGGCTACAGTGGGGGTAATGGGAGAGGTGATTCTCTTATGAACTCAACTTCTCGAAATGTCTGGGGAAATGGAGCCCTGAATAATGCCAATAACCCAGTTAGCCCAGGTGCTTACTTGGGATCTGGAAGTGGGGCTTTTGGTATTACAATTGGAAATAGTGGCACAAACTGGGGTCAATCCCTTCCAAACCAGGGTGGAGGGAATGCTTCTGGCTATGCTACCGGGAATAGTGTTTATGGAGGTGGAGATAGCAGCTTTGGGTTAGGAGGAGGCGGCTATGGAAGAACTAGCAGTGCTGGTGTAACTCCGTCATCATTTTCTGCATCAACTGGTGGTTTTGAAGGGTCCTATGGGGACTTATACCGTAGTGGTTCAGTTTATGGGGACTCAACTTGGCGATCTGCTGCTTCTTCTGACCTAGATGGTTCAGGCTCGTTTGGTTATGGACTTGGTGGTATAGCATCAGATGACCCAGTAAAGAGTTCTGAGGGTTATATTGGAAACTACAGTGTTACAAATAGACAATCTAATAGAGGAATTGCTGCCTAGGAGATATGTTAATTGCATATGTCATGGTAAGGGTAGATGAAGGGAAACTGGTCAACAGAATGAGGTATTGTGAAGTCATACATCTCCATCAGTAAAGAGGTTTCAGCTCATAAGGAAATTCGTCATAAATAGCTAACGGTGTTCTTTCATTTGAAGTATACACATTTAAAGAGAAAGCAGTTACAAGGGATTTTGTGTAAGGTTTGGGATTTCTTTTTTCTTGTCCTCTTTTATATTTTTAAGATTTAGGCTCCTTCCTTGGAATTTGTTCGAGTTGTAAAATCAGATTGCGGGATATAATCAGGAAGATTGGTTCCTATAGTGTAATTGTGCATGACCAGAGAGGCGGTATGGTTAGTACGCTTAGTGATAGAGTATTAATTCTTGAGTTTCTTCTTTCTTTTGCCACTGTAATGCCTGGCATAGGGTGTTAGTTCTTGTCACCACCTTTTTGCTGGCATATGCTTCTTATCAAATTGTAAGTGAGGTTCTCAGTTTGATTTAGCAGTGTGAAACATGAGAGGGATGGCCATATAGGATCCCCATCAAATAATTAAGTTGCTGAACAATTTTATTAATTTTGCTTAGACAGTTCATTATATACAACTTCATTAATA 2051 0.4242 MESDLGKLFIGGISWDTDEERLKEYFGKYGEVIEAVIMRDRTTGRARGFGFVVFADPAVAERVIMDKHIIDGRTVEAKKAVPRDDHHTINRQSGGVHGSPGPGRTKKIFVGGLPSTITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFHELNGKMVEVKRAVPKELSPGLNRSPLIGYNYGLGRANSYLNSCAQGFNMSPVGGYGVRMDGRFSPVTSGRSGFSPFGTTAYGMGVNLEAGLNPSYGSTSNYGSNLGYGRIFSPFYNGNSSRYTTPIGYSGGNGRGDSLMNSTSRNVWGNGALNNANNPVSPGAYLGSGSGAFGITIGNSGTNWGQSLPNQGGGNASGYATGNSVYGGGDSSFGLGGGGYGRTSSAGVTPSSFSASTGGFEGSYGDLYRSGSVYGDSTWRSAASSDLDGSGSFGYGLGGIASDDPVKSSEGYIGNYSVTNRQSNRGIAA 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach3g00915 477 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Bach3g00915 477 SUPERFAMILY RNA-binding domain, RBD 4 104 IPR035979 GO:0003676
Bach3g00915 477 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 473 - -
Bach3g00915 477 FunFam Heterogeneous nuclear ribonucleoprotein 1 103 190 - -
Bach3g00915 477 CDD RRM2_Hrp1p 107 184 - -
Bach3g00915 477 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Bach3g00915 477 MobiDBLite consensus disorder prediction 80 104 - -
Bach3g00915 477 Gene3D - 105 185 IPR012677 -
Bach3g00915 477 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Bach3g00915 477 SMART rrm1_1 107 179 IPR000504 GO:0003723
Bach3g00915 477 SMART rrm1_1 7 78 IPR000504 GO:0003723
Bach3g00915 477 Gene3D - 6 87 IPR012677 -
Bach3g00915 477 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Bach3g00915 477 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 166 IPR000504 GO:0003723
Bach3g00915 477 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Bach3g00915 477 SUPERFAMILY RNA-binding domain, RBD 105 193 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach3g00915 Bach-Chr3 19790165 19793585 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach3g00915 5 180 Eukaryotic Initiation Factors Gene Family AT2G23350 23.034 8.60e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach3g00915 K14411 - gmx:100794390 805.053
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bach12g01773 12 14058717 14060456 Bach3g00915 3 19790165 19793585 BWGD
Bach3g00915 3 19790165 19793585 Bach3g00915 3 19790165 19793585 ECH