Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bach3g00908 | CGGCAGTAGAATTGTGTTTCTGCCAAAATGGGTATTTCTCGTGATTCCATGCATAAGAGGCGTGCCACTGGAGGAAAGAAGAAGGCTTGGAGGAAGAAGCGAAAGTATGAGCTTGGTAGGCAACCGGCTAACACAAAGCTGTCAAGCAACAAAACTGTTAGGAGGGTTAGGGTTCGAGGTGGAAATGTGAAGTGGCGTGCTTTGAGGCTTGATACGGGTAATTACTCATGGGGAAGTGAAGCCGTGACTAGGAAAACAAGAGTTCTTGACGTGGTGTACAATGCCTCTAACAATGAGCTGGTTCGTACTCAAACATTGGTCAAGAGTGCTATTGTGCAGGTTGATGCAGCACCCTTCAAGCAGTGGTATCTCCAGCATTATGGTGTTGACATTGGTCGCAAGAAGAAGAGTTCAACTTCTGCCAAGAAGGAAGGCGAGGATGGTGAAACTACAACTGAGGAAGTAAAAAAGAGCAACCATGTCTTGAGAAAGATAGAGAAGCGCCAAGAAAACCGAAAGCTTGACCCTCATATTGAAGAACAATTTGGAGGTGGTCGTTTATTGGCTTGTATCTCATCTCGACCTGGTCAATGTGGTCGTGCTGATGGTTATATATTGGAGGGAAAAGAGCTAGAATTCTACATGAAGAAGATTCAGAGGAAGAAGGGCAAGGGAGCTGCTGCCTAAATCTTTAGCACTTGTTATGTCAGAATTTCTATTTTTAAGTTACTGTATTTCTCGAGTTCAATCATATGACAAATTTTGACAGAAGAGATATACTTTTCTGGGTTGAGTGGGGTGTTTGACTGTTACTTTAGACCTGACCTTTTAATTATTTTAGTAATAACTTGGCATGTTTTAAT | 863 | 0.4253 | MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRVLDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRKKKSSTSAKKEGEDGETTTEEVKKSNHVLRKIEKRQENRKLDPHIEEQFGGGRLLACISSRPGQCGRADGYILEGKELEFYMKKIQRKKGKGAAA | 219 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bach3g00908 | 219 | MobiDBLite | consensus disorder prediction | 1 | 42 | - | - | |
| Bach3g00908 | 219 | FunFam | 40S ribosomal protein S8 | 32 | 161 | - | - | |
| Bach3g00908 | 219 | MobiDBLite | consensus disorder prediction | 125 | 148 | - | - | |
| Bach3g00908 | 219 | Pfam | Ribosomal protein S8e | 5 | 197 | IPR022309 | - | |
| Bach3g00908 | 219 | PANTHER | 40S RIBOSOMAL PROTEIN S8 | 1 | 215 | IPR001047 | GO:0003735|GO:0005840|GO:0006412 | |
| Bach3g00908 | 219 | MobiDBLite | consensus disorder prediction | 11 | 26 | - | - | |
| Bach3g00908 | 219 | CDD | Ribosomal_S8e_like | 5 | 197 | - | - | |
| Bach3g00908 | 219 | Gene3D | - | 27 | 213 | - | - | |
| Bach3g00908 | 219 | NCBIfam | ribosomal protein eS8 | 1 | 199 | IPR001047 | GO:0003735|GO:0005840|GO:0006412 | |
| Bach3g00908 | 219 | Gene3D | Ribosomal protein S8e, subdomain | 108 | 176 | IPR042563 | - | |
| Bach3g00908 | 219 | FunFam | 40S ribosomal protein S8 | 109 | 176 | - | - | |
| Bach3g00908 | 219 | ProSitePatterns | Ribosomal protein S8e signature. | 11 | 30 | IPR018283 | GO:0003735|GO:0005840|GO:0006412 | |
| Bach3g00908 | 219 | FunFam | 40S ribosomal protein S8 | 162 | 215 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Bach3g00908 | Bach-Chr3 | 19735607 | 19738349 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Bach3g00908 | 1 | 206 | Cytoplasmic Ribosomal Protein Gene Family | AT5G59240 | 84.466 | 8.89e-128 | 357 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bach3g00908 | K02995 | - | nnu:104594192 | 396.356 |