Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach3g00786 ATGGACAAACATTCTGGGGATTCTGTGTCAGTTCGTGATATTGCAGGTTCCTCAGAGATTTACTCTTCTAATGTAGCTAAAAGAGTAGGAAGTAATGCATGGGGGATACCACGTGGGACAGATGTATATCATGCATCAAGTGATGCTAGCTTGTTTTCTACTTCACTACCTGTTCTTCCACATGAAAAGTTGAATTTTACTGATTCAGAGCATAATGGTGAATCAATCAATGATAGCTTGTCAATATTAAATAAAGATCAGAAAGAAGATGAGGGACATGATCCATTTGAAAATATTGAAACCAATGCAATTGGAAACATGCTTCCTGATGATGAAGAAGAGCTTTTGGCTGGGATTACAGATGATTTTGACCTAAGTAGGTTGCCCAGCCAACTGGAGGATCTAGATGAAAATGATCTGTTTGGAAGTGGAGGGGGGTTTGAAATGGAATTTGAACCCCAAGATAGCCTTAGTATTGGTATGTCAAAGATCAGCTTATCCGATGGAGTTGCTTCAAATGGTATTGGTCACTACGCACTACCAAATGGTGTGGGAACAGTGGCTGGGGAGCATCCCTATGGGGAGCATCCATCAAGGACTTTATTTGTTCGAAACATCAATAGTAATATTGAGGATTCCGAATTAAGATCTTTGTTTGAGCAATATGGGGATATCAGAACTTTGTACACTGCATGCAAGCATCGGGGTTTTGTGATGATATCTTACTATGACATTCGAGCAGCTCGTACTGCAATGCGTGCTTTACAAAACAAGCCCTTGAGACGAAGAAAACTTGATATTCATTTTTCAATTCCCAAGGATAACCCATCAGAAAAGGATATTAATCAGGGAACTCTTGTAGTGTTCAATCTGGATCCATCTGTTTCAAATGATGACCTTCGTCAAATATTTGGGGCTTATGGGGAGGTCAAAGAGATCAGGGAAACACCACATAAGAGACACCATAAATTTATTGAATTTTATGATGTTAGAGCGGCAGAGGCAGCTCTTAAAGCATTAAATCGAAGTGATATTGCTGGGAAACGCATCAAACTTGAACCTAGCCGCCCTGGTGGAGCTCGTCGAAACTTGATGCAACAACTGAGTCAGGAGCTGGAACAAGATGAAGCACGGACTTTCAGACATCAAGTAGGTTCACCATTGACCAACTCTCCTCCTGGTAATTGGGCACAGTTTGGCAGTCCGGTTGAGCATAATCCTTTAGTTTCTTTTAGTGAGTCCCCTGGTTTGGGTTGTGCCAGCCCAATGAATAGCCATCAGTTACCCGGATTGGCTGCAATTCTTTCACCTCATGCATCAAACTCTACAAAGATCGCACCTATTGGTAAGGACCCTGGAAGGGTTAGTGCTTCAAATTCAATATATGAGAACTCTGGATCAACACAAGGAGCAGGTTTTCAGCATTCTCTGCCCTTTCCTGAGCAAAAAGTAAATGCAAGTCCTAGACCCATATCTAATTTTGGTGAATCAAACTTAAGCTCATCAACCATTGGAACGTTGTCTGGTCCTCAGTTTCTTTGGGGAAGTCCAACTCCTTATTCAGAGCATGCGAGTACATCTACCTGGTCTTCATCTTCATTTGGGCTGCCATTCACATCTAGTAGCCAGAGGCAGGGTTTCCCATATGCTAGCCAACATAGTTCTTTTCTTGGTTCCCACGGTCATCATCATGTAGGATCTGCTCCTTCTGGTGTTCCTCTTGATCGAAAGTTTAGCTACTTCCCAGAGTCACCAGAAACTTCTTTCGTGAATCAAGTTGCATTTGGGAGTTTAAATCACAATGATGGTAATTTTATGATGAACATAGGTGCTCGTGCAACTGTAGGAGTTGGTGTTGGCCTTCCAGGAAATTCCACTGATATTGGTTCACCTAGTTCTAGAATGGTGTCATTGCCCAGGCATGGTTCCTTGTTCCTTGGAAATGGTTTTTATTCTGGACCTGGAACAACTAACAATGAAGGATTAGCTGAACGTGGTCGGAGTCGTCGACCTGAAAATAGCGGGACCCAAATTGATAGCAAGAAGCAGTATCAGCTTGATCTAGACAAAATTAGCAGTGGGGAAGATACTAGGACTACATTAATGATTAAAAACATTCCTAACAAGTACACTTCAAAGATGCTATTGGCTGCAATTGATGAGAATCACCGTGGCACTTATGATTTTCTCTACTTACCAATTGACTTTAAGAACAAGTGCAATGTGGGTTATGCTTTCATCAATATGGTGTCTCCTTCACACATAATTCCCTTCTATAAGGCGTTTAATGGGAAGAAGTGGGAGAAGTTTAATAGTGAAAAAGTTGCTTTATTGGCATATGCACGAATCCAGGGAAAGGCTGCACTTGTGACACACTTTCAGAATTCAAGCTTAATGAATGAGGACAAGCGTTGCAGGCCAATTCTCTTTCACTCAGAGGGCCAAGAGACTGGTGATCAGGAAGCATTCCTTTCCAGCAACTTGAACATATGCATTCGACAACCTGATGGGTCATACTCAGGTGATTTATTGGAGAGCCCAAAGGGCAATTTCGATGAGAGGTAA 2565 0.4191 MDKHSGDSVSVRDIAGSSEIYSSNVAKRVGSNAWGIPRGTDVYHASSDASLFSTSLPVLPHEKLNFTDSEHNGESINDSLSILNKDQKEDEGHDPFENIETNAIGNMLPDDEEELLAGITDDFDLSRLPSQLEDLDENDLFGSGGGFEMEFEPQDSLSIGMSKISLSDGVASNGIGHYALPNGVGTVAGEHPYGEHPSRTLFVRNINSNIEDSELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDPSVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKALNRSDIAGKRIKLEPSRPGGARRNLMQQLSQELEQDEARTFRHQVGSPLTNSPPGNWAQFGSPVEHNPLVSFSESPGLGCASPMNSHQLPGLAAILSPHASNSTKIAPIGKDPGRVSASNSIYENSGSTQGAGFQHSLPFPEQKVNASPRPISNFGESNLSSSTIGTLSGPQFLWGSPTPYSEHASTSTWSSSSFGLPFTSSSQRQGFPYASQHSSFLGSHGHHHVGSAPSGVPLDRKFSYFPESPETSFVNQVAFGSLNHNDGNFMMNIGARATVGVGVGLPGNSTDIGSPSSRMVSLPRHGSLFLGNGFYSGPGTTNNEGLAERGRSRRPENSGTQIDSKKQYQLDLDKISSGEDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIIPFYKAFNGKKWEKFNSEKVALLAYARIQGKAALVTHFQNSSLMNEDKRCRPILFHSEGQETGDQEAFLSSNLNICIRQPDGSYSGDLLESPKGNFDER 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach3g00786 854 CDD RRM1_MEI2_like 198 274 IPR034453 -
Bach3g00786 854 SUPERFAMILY RNA-binding domain, RBD 196 359 IPR035979 GO:0003676
Bach3g00786 854 SMART rrm1_1 200 268 IPR000504 GO:0003723
Bach3g00786 854 SMART rrm1_1 700 776 IPR000504 GO:0003723
Bach3g00786 854 SMART rrm1_1 285 353 IPR000504 GO:0003723
Bach3g00786 854 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 201 265 IPR000504 GO:0003723
Bach3g00786 854 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 286 351 IPR000504 GO:0003723
Bach3g00786 854 MobiDBLite consensus disorder prediction 447 498 - -
Bach3g00786 854 Pfam RNA recognition motif 2 698 794 IPR007201 -
Bach3g00786 854 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 199 272 IPR000504 GO:0003723
Bach3g00786 854 CDD RRM3_MEI2_like 701 786 IPR034454 -
Bach3g00786 854 MobiDBLite consensus disorder prediction 649 679 - -
Bach3g00786 854 FunFam MEI2-like protein 5 isoform 2 188 282 - -
Bach3g00786 854 PANTHER RNA RECOGNITION MOTIF-CONTAINING 61 816 - -
Bach3g00786 854 CDD RRM2_MEI2_like 283 353 - -
Bach3g00786 854 Gene3D - 283 381 IPR012677 -
Bach3g00786 854 Gene3D - 188 282 IPR012677 -
Bach3g00786 854 MobiDBLite consensus disorder prediction 457 475 - -
Bach3g00786 854 SUPERFAMILY RNA-binding domain, RBD 700 785 IPR035979 GO:0003676
Bach3g00786 854 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 284 357 IPR000504 GO:0003723
Bach3g00786 854 FunFam Protein MEI2-like 1 283 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach3g00786 Bach-Chr3 18564789 18569997 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach3g00786 194 452 Eukaryotic Initiation Factors Gene Family AT3G16380 23.958 1.25e-10 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach3g00786 - - gmx:100812324 1419.83