Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach3g00720 ATGTCACGGACTGATAGAATGGCTACGGATCTTAACAGAACGGGTCCTGTCGAAAGAGACACTGAGCAGGCGATTACTGCTTTAAAGAAAGGGGCATACTTACTCAAATATGGAAGAAGGGGAAAGCCCAAATTTTGTCCATTTCGGCTTTCCAACGTGAGTATGGATGAATCTGTTTTGATATGGTTCTCAGGGAAAGAGGAGAAACACCTTAAACTAAGCCATGTGTCTAGAATCATATCCGGACAACGCACACCAATCTTTCAGAGATACCCCCGACCTGAGAAAGAATACCAGTCATTTTCTCTTATCTACAATGATAGGTCACTGGACTTGATTTGCAAAGATAAAGATGAAGCTGAGGTTTGGTTCAGTGGTTTGAAAGCATTGATTTCACGTAGTCATCAGCGGAAGTGGAGAACAGAGTCAAGAAGTGATGGTATCCCATCTGAAGCTAATAGTCCTAGAACATACACTAGAAGAAGTTCTCCCTTAAATTCTCCTTTTGGTAGTAATGAAAGCTTGCAAAAGGATAGTGGGGATCACCTTCGCCTTCACAGTCCATATGAGAGCCCCCCTAAGAATGGTTTGGACAAAGCATTATCTGATGTGATTTTGTATGCTGTTCCACCCAAAGGTTTCTTCCCCCCAGATTCTGCCAGTGGTTCTGTCCACTCTATTTCATCGGGAGGTTCTGATAGTGTACATGGTAATATGAAGACAATGGCAATGGATGCTTTTAGAGTTAGTCTATCAAGTGCCGTTAGCTCATCTAGTCAAGGTTCAGGTCATGATGATGGTGATGCCTTAGGGGATGTTTTTATTTGGGGGGAAGGCACAGGTGATGATGTTCTAGGTGGTGGGGCTCGCCGAGTTGGGGGTTGTTCTGGTGTAAAAATGGATTCTCTATTGCCCAAAGCCTTGGAATCTGCTGTAGTACTTGATGTGCAGAACATTGCTTGTGGAGGACGGCATGCTGCATTAGTGACAAAGCAAGGAGAGATTTTCTCTTGGGGGGAGGAATCAGGAGGCAGGCTTGGGCACGGTGTTGATTCTGATGTCCTCCATCCAAAGCTTATAGAAGCCCTGAGTAATACAAATATTGAACTTGTAGCTTGTGGGGAGTACCATACATGTGCTGTTACACTTTCGGGTGATCTTTATACATGGGGGGATGGCACTTACAATTATGGTCTTCTGGGGCATGGAAATCAAGTGAGTCACTGGGTCCCAAAAAGAGTAAATGGACCCTTGGAGGGCATACATGTTTCATCTATCTCTTGTGGACCATGGCACACTGCTGTTGTAACCTCTGCTGGGCAATTATTTACTTTTGGTGATGGTACATTTGGTGTTCTGGGTCATGGAGACCGAAAAAATGTTTCTATACCAAGAGAAGTAGAATCTCTTAAGGGTCTCCGTACTGTGCGGGCTGCTTGTGGTGTTTGGCATACTGCAGCAGTGGTGGAAGTCATGGTTGGGAATTCAAGTTCCAGTAACTGCTCTTCAGGGAAGCTGTTTACTTGGGGTGATGGAGACAAAGGTCGACTTGGGCATGGAGACAAGGAAGCAAAACTTGTTCCTACCTGTGTTGCAGCTCTTGTTGAACCCAACTTTTGTCAAGTTGCTTGTGGACATAGTCTGACCATTGCATTGACTACCTCAGGTCATGTCTACACAATGGGTAGTCCGGTTTATGGCCAGTTAGGGCATCCTCAAGCTGATGGCAAGCTACCAGCTCGTATTGAAGGAAAGCTCTCAAAGAGTTTTTTGGAGGAGATAGCATGTGGTGCATATCATGTTGCAGTTTTGACTTCAAGGACTGAAGTTTACACATGGGGCAAGGGTGCAAATGGCCGTTTAGGCCATGGAGATATAAATGATAGAAATTCCCCAACATTAGTAGAAGCTCTGAAAGACAAACAAGTCAAAAGTATTGCTTGTGGTACTAATTTCACTGCAGCTATCTGTCTTCATAAGTGGGTTTCTGGTGTTGACCAGTCAATGTGTTCTGGCTGTCGGCTTCCATTTAATTTCAAGAGAAAGCGCCATAATTGCTACAATTGTGGGCTTGTTTTCTGTCATTCATGCAGCAGTAAGAAATCTCTTAAGGCTTCAATGGCACCAAACCCCAACAAACCATACCGTGTCTGTGATAATTGTTTTAATAAACTAAGGAAAGCTATTGAAACTGATTCTTCATCACATTCTTCTATGAGCAGAAGAGGAAGTATCAATCAAGGATCTCTTGAGTTTATTGACAAGGATGATAAGTTGGATGCCAGATCTCGCAATCAACTCGCTAGGTTTTCTTCAATGGAATACTTGAAGCAAGTGGAAAGCCGGTCTTCAAAGAAAAACAAGAAATTAGAATTCAACAGCAGTCGTGTTTCACCTGTTCCTAATGGAGGTTCCCAGTGGGGGGCATTGAATATTTCTAAATCTTTTAACCCGGTTTTTGGATCATCAAAGAAGTTTTTTTCAGCTTCTGTTCCTGGTTCTAGAATTGTTTCTCGAGCAACATCCCCAATATCTAGACGGCCTAGTCCGCCTCGGTCAACTACTCCAACACCTACACTAGGAGGACTCACTTCCCCTAAGATAGCTGTGGATGATGCTAAGAGGACAAATGATAGCCTCAGTCAGGAAGTTATTAAATTAAGATCACAGGTTGAAAATCTGACTCGCAAAGCACAACTTCAAGAAATTGAGTTGGAAAGAACAACTAAACAGCTGAAGGAAGCAATAGCAATTGCTGGTGAAGAAACTGCTAAATGCAAAGCAGCAAAGGAAGTAATCAAGTCGCTTACTGCCCAGTTGAAGGACATGGCTGAGAGGCTACCTGTGGGAGCAGCCAGGAATGTCAAATCACCTTCTCTTGCTTCTTTTGGCTCCAACCCTGGTTCTAATGAAGTCAGCAATGTTTCTATTGACCGATTAAATATTCAAACAACAATGGAACCAGACGTAACTGGATCAAATAACCAGTTACTTTCAAATGGATCAAGCACTATTAGTAACCGTAGTGCAGGTCACAATAAACCAAGCCAGCCAGATACAACTAATAGAAACGGGAGCAGAACAAAGGAAAGTGAATCACGTAATGAGTCTGAATGGGTCGACCAAGATGAACCTGGAGTATATATTACACTCACTGCCCTACCAGGAGGTGTAAAAGATCTTAAGAGAGTTCGCTTCAGTCGGAAGCGGTTCAGTGAGAAACAGGCAGAACAATGGTGGGCTGAAAATCGGGCAAGAGTATATGAAAAATACAATGTGCGCATGGTCGACAAGTCTAATGTTGGTGTTGGGGGTGAAGACCTGGCTCATTGA 3333 0.4347 MSRTDRMATDLNRTGPVERDTEQAITALKKGAYLLKYGRRGKPKFCPFRLSNVSMDESVLIWFSGKEEKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWFSGLKALISRSHQRKWRTESRSDGIPSEANSPRTYTRRSSPLNSPFGSNESLQKDSGDHLRLHSPYESPPKNGLDKALSDVILYAVPPKGFFPPDSASGSVHSISSGGSDSVHGNMKTMAMDAFRVSLSSAVSSSSQGSGHDDGDALGDVFIWGEGTGDDVLGGGARRVGGCSGVKMDSLLPKALESAVVLDVQNIACGGRHAALVTKQGEIFSWGEESGGRLGHGVDSDVLHPKLIEALSNTNIELVACGEYHTCAVTLSGDLYTWGDGTYNYGLLGHGNQVSHWVPKRVNGPLEGIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKNVSIPREVESLKGLRTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVAALVEPNFCQVACGHSLTIALTTSGHVYTMGSPVYGQLGHPQADGKLPARIEGKLSKSFLEEIACGAYHVAVLTSRTEVYTWGKGANGRLGHGDINDRNSPTLVEALKDKQVKSIACGTNFTAAICLHKWVSGVDQSMCSGCRLPFNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNKLRKAIETDSSSHSSMSRRGSINQGSLEFIDKDDKLDARSRNQLARFSSMEYLKQVESRSSKKNKKLEFNSSRVSPVPNGGSQWGALNISKSFNPVFGSSKKFFSASVPGSRIVSRATSPISRRPSPPRSTTPTPTLGGLTSPKIAVDDAKRTNDSLSQEVIKLRSQVENLTRKAQLQEIELERTTKQLKEAIAIAGEETAKCKAAKEVIKSLTAQLKDMAERLPVGAARNVKSPSLASFGSNPGSNEVSNVSIDRLNIQTTMEPDVTGSNNQLLSNGSSTISNRSAGHNKPSQPDTTNRNGSRTKESESRNESEWVDQDEPGVYITLTALPGGVKDLKRVRFSRKRFSEKQAEQWWAENRARVYEKYNVRMVDKSNVGVGGEDLAH 1110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach3g00720 1110 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 319 329 IPR000408 -
Bach3g00720 1110 FunFam PH, RCC1 and FYVE domains-containing protein 1 494 665 - -
Bach3g00720 1110 SUPERFAMILY RCC1/BLIP-II 271 661 IPR009091 -
Bach3g00720 1110 ProSiteProfiles BRX domain profile. 1037 1092 IPR013591 -
Bach3g00720 1110 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 440 491 IPR000408 -
Bach3g00720 1110 MobiDBLite consensus disorder prediction 778 807 - -
Bach3g00720 1110 Coils Coil 926 946 - -
Bach3g00720 1110 MobiDBLite consensus disorder prediction 1025 1041 - -
Bach3g00720 1110 Coils Coil 870 911 - -
Bach3g00720 1110 CDD FYVE_like_SF 669 722 - -
Bach3g00720 1110 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 478 488 IPR000408 -
Bach3g00720 1110 FunFam Putative E3 ubiquitin-protein ligase HERC1 666 734 - -
Bach3g00720 1110 Pfam Transcription factor regulating root and shoot growth via Pin3 1036 1091 IPR013591 -
Bach3g00720 1110 MobiDBLite consensus disorder prediction 146 176 - -
Bach3g00720 1110 Pfam Unstructured region between BRX_N and BRX domain 962 1030 - -
Bach3g00720 1110 Gene3D - 395 498 IPR009091 -
Bach3g00720 1110 Gene3D - 220 394 IPR009091 -
Bach3g00720 1110 Pfam Pleckstrin homology domain 22 131 IPR001849 -
Bach3g00720 1110 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 385 439 IPR000408 -
Bach3g00720 1110 MobiDBLite consensus disorder prediction 986 1024 - -
Bach3g00720 1110 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 426 436 IPR000408 -
Bach3g00720 1110 MobiDBLite consensus disorder prediction 793 807 - -
Bach3g00720 1110 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 271 332 IPR000408 -
Bach3g00720 1110 SMART fyve_4 658 727 IPR000306 GO:0046872
Bach3g00720 1110 Pfam Regulator of chromosome condensation (RCC1) repeat 609 656 IPR000408 -
Bach3g00720 1110 Pfam Regulator of chromosome condensation (RCC1) repeat 503 552 IPR000408 -
Bach3g00720 1110 Pfam Regulator of chromosome condensation (RCC1) repeat 333 381 IPR000408 -
Bach3g00720 1110 Pfam Regulator of chromosome condensation (RCC1) repeat 555 604 IPR000408 -
Bach3g00720 1110 Pfam Regulator of chromosome condensation (RCC1) repeat 440 488 IPR000408 -
Bach3g00720 1110 Pfam Regulator of chromosome condensation (RCC1) repeat 384 436 IPR000408 -
Bach3g00720 1110 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 664 726 IPR017455 -
Bach3g00720 1110 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 556 607 IPR000408 -
Bach3g00720 1110 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 672 732 IPR013083 -
Bach3g00720 1110 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 67 946 - -
Bach3g00720 1110 SUPERFAMILY PH domain-like 20 131 - -
Bach3g00720 1110 SUPERFAMILY FYVE/PHD zinc finger 660 731 IPR011011 -
Bach3g00720 1110 FunFam PH, RCC1 and FYVE domains-containing protein 1 242 493 - -
Bach3g00720 1110 MobiDBLite consensus disorder prediction 138 195 - -
Bach3g00720 1110 Gene3D - 500 671 IPR009091 -
Bach3g00720 1110 Pfam Transcription factor BRX N-terminal domain 921 954 IPR027988 -
Bach3g00720 1110 PRINTS Chromosome condensation regulator RCC1 signature 335 351 IPR000408 -
Bach3g00720 1110 PRINTS Chromosome condensation regulator RCC1 signature 603 624 IPR000408 -
Bach3g00720 1110 PRINTS Chromosome condensation regulator RCC1 signature 426 442 IPR000408 -
Bach3g00720 1110 PRINTS Chromosome condensation regulator RCC1 signature 442 456 IPR000408 -
Bach3g00720 1110 PRINTS Chromosome condensation regulator RCC1 signature 316 329 IPR000408 -
Bach3g00720 1110 PRINTS Chromosome condensation regulator RCC1 signature 385 401 IPR000408 -
Bach3g00720 1110 PRINTS Chromosome condensation regulator RCC1 signature 545 563 IPR000408 -
Bach3g00720 1110 MobiDBLite consensus disorder prediction 838 875 - -
Bach3g00720 1110 Gene3D - 19 140 IPR011993 -
Bach3g00720 1110 MobiDBLite consensus disorder prediction 986 1041 - -
Bach3g00720 1110 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 504 555 IPR000408 -
Bach3g00720 1110 Pfam FYVE zinc finger 660 726 IPR000306 GO:0046872
Bach3g00720 1110 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 608 659 IPR000408 -
Bach3g00720 1110 CDD PH_PLC_plant-like 19 132 - -
Bach3g00720 1110 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 333 384 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach3g00720 Bach-Chr3 17792465 17800312 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach3g00720 930 1098 Major Intrinsic Protein MIP AT1G31880 33.333 5.31e-15 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach3g00720 - - cave:132163343 1934.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bach3g00720 3 17792465 17800312 Bach3g00720 3 17792465 17800312 ECH