Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach3g00576 ATGAAGCAGAGGAAAGAGAACCAAGGTTACAGTGAAGAGTTCCAGGCAATGTTAGAGAGATTTGACCAAGAAGATAGCTGGGAAGAAACTAGTTTGGTCTTGGAGAAGAAAAGGAGACTAGGCTTTAATCAAGTCAAGGCCCTAGAGAGAAGCTTTGAACTTGGTAACAAGCTTGACCCAGAGAGGAAAGTGAAACTAGCTCAAGAACTAGGCTTGCAACCAAGACAAGTTGCAATTTGGTTCCAAAATCGCAGAGCACGTTGGAAGACTAAGCAACTGGAAAGAGACTACAGCATCCTCAAGTCAAATTTTGATGCTCTGAAGATTGATTACAGTAATCTCGAGCAAGAAAATGAAGCTCTAACCATTAAGCTAAGAGAGTTGAAGGCAAAGAACAAAGGAAACAGAGCAGAGATGAATGAATCTGTGAAAGAAGAATCTCCCATTTCAGATGTGGAAAGCCAGAAATTTACTGAGCAGAATTTTGCAGGTAGTGCAGCATCTGATAGCAATTCAAATGGGGCTGTGAAGGAAGAAAGCAATGTGGATTCTCCTCTGTGTTTCAATGAATTTTTTCCCAGTTCTGGTTCAATGATAAACTGGCTTCAGTATTCTGACTCAAGAGGATCTCCAGAGAGAGATTTCTGGAGAATGGAGGAACAGAGTTTGATTAGTGTTAATGAGATCTACAATTTCTTTTCTGTTGATCAATCTCCTGCCCTTTAA 726 0.405 MKQRKENQGYSEEFQAMLERFDQEDSWEETSLVLEKKRRLGFNQVKALERSFELGNKLDPERKVKLAQELGLQPRQVAIWFQNRRARWKTKQLERDYSILKSNFDALKIDYSNLEQENEALTIKLRELKAKNKGNRAEMNESVKEESPISDVESQKFTEQNFAGSAASDSNSNGAVKEESNVDSPLCFNEFFPSSGSMINWLQYSDSRGSPERDFWRMEEQSLISVNEIYNFFSVDQSPAL 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach3g00576 241 CDD homeodomain 36 92 IPR001356 GO:0003677
Bach3g00576 241 ProSitePatterns 'Homeobox' domain signature. 66 89 IPR017970 GO:0000981|GO:0006355
Bach3g00576 241 Gene3D - 42 89 - -
Bach3g00576 241 Pfam Homeodomain 40 89 IPR001356 GO:0003677
Bach3g00576 241 ProSiteProfiles 'Homeobox' domain profile. 31 91 IPR001356 GO:0003677
Bach3g00576 241 FunFam Homeobox-leucine zipper protein HOX13 39 88 - -
Bach3g00576 241 PRINTS Lambda-repressor HTH signature 71 87 IPR000047 GO:0003677
Bach3g00576 241 PRINTS Lambda-repressor HTH signature 62 71 IPR000047 GO:0003677
Bach3g00576 241 SMART HOX_1 37 95 IPR001356 GO:0003677
Bach3g00576 241 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 24 175 IPR045224 GO:0003700
Bach3g00576 241 Pfam Homeobox associated leucine zipper 91 131 IPR003106 GO:0006355|GO:0043565
Bach3g00576 241 SUPERFAMILY Homeodomain-like 34 93 IPR009057 -
Bach3g00576 241 Coils Coil 97 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach3g00576 Bach-Chr3 15700333 15701153 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach3g00576 10 131 Homeobox Transcription Factor Family AT5G65310 64.000 9.88e-47 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Bach3g00576 Homeodomain 1.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach3g00576 K09338 - qsa:O6P43_015335 285.804