Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach3g00273 ATGGCGATTAGTACGGACGCAGATGAACTCCGAGCCCTACTTTCCGAGCAAAGCAACGAGTTGGTGAGGGCCCAAACCATAGACTCCGATTTAGACGTTGCTTTCGAACTGCAAATGCAGGAAGCCATTGATGCCTCTCTGGCTTCACAACTATCAGCTTCAACTCTGGCGCCGTCAACATCTTCAGCTTCAACTCTTGCGCCGTCAACATCTTCAGTTTCACTTACAGAGGGAGGGATAGACGCTTCCGTTCTGGGCTTGGCGACAACATTTTTGCTGGAAGACTTGCAGAGTTTTACGCAACGACTGGCTGATCACGAAAAATGTCAATCGGAGATGGAAAAAACGGTTGAAGATCTTGACCGTCGGATTTTTGATCAGAAATTCGCTAGGGATATTCTTAATATACCTGACCATGAGTGGGAAAACTACGGTGACAATTTCCATAGGCCCTACTATAATGATGGAGCCTCATCTTCATCTTCTTCCTCATCGTTGCGGAGCCCTTCCCTGCAAACAGAGAATTTCAAATTGTACTTCAAGGGTTTAGTGAGCGAAGAGAGGGTTATGGATAACAGGGTAGTTGTTGCTTCCGCCGGGATTGCCATCTGTGATTCGAGGGATAGTCTGATTTTTGAAGTAAAGAAGCCTCTTGAAGCAGTGGAAACTGGTGGATTGGTGCTGAGCGGTGAATGTGCTGAGCTGCAAGCTTTGATTGAAGGTCTCGATATGGCTTTTAGCTTGGGATTACAAAGGATAACCTTTTTCTGCGATGACTCTATGCTTTACCAATATGTCACAGCGAGAGAGTCGGTAAGCCATGGAAAATTGGGAGGGCTAGTCAAACAGGTGTTTCATCTCCAAGAAAAATTTGTATCTTGTGTGCCATCTCTTGTTGGAAGGAATGATATCAAATATGCTTTTAAATCTGCAAGAGATTCCATAGTTTCTCAAATCACATGGTCTGAAGAAACTGATAACGGCAAGATCTTGAAGGAAACTTGCGTCATTTGTTTTGAAGATACTGATGTTGATAAAATATTTTCAGTGAATAATTGCCTGCACAGGTATTGTTTCTCATGTATGAAAAAGCATGTGGAGGTGAAGCTGCTTAATGGGATGATGGCAAATTGCCCTCATGATGGTTGTAAATCGGAGGTGAAAGTTGATAGTTGCAGAAATTTTTTAGCGCCAGAGTTGGTGGAAGTCATCAGCCAACGCATTAATGAATCAGCTATTCCTGTAACAGAGAAAGTGTATTGCCCTTTTCCTAGGTGCTCAGCTTTGATGTCAAAGCATGAGCTCTTAGAGTACACAAAGACTTCGTTTTTTGGAGCTGAACAATCTGGAGCCAGGAAATGCATGAAATGCCTTCAATTTTTCTGTATCAATTGTGGGGTCCCCTGGCATTACAATATGATCTGTCATGACTATAAAAGGTCAAATCATTATCTTCAGGCAGCAGATACTAAGCTGAAGTCTCTTGCTTCCAGCAAACTCTGGCGGCAGTGTGTGAAGTGCAGTCACATTGTTGAACTAGCTGAAGGTTGCTATCATATTACATGCAGGTGTGGCTATGAATTTTGCTACACGTGTGGAGCTGAGTGGATGAACAAGAAAGCAACATGCTCCTGTCCAATTTGGGATGAGCGCAACATAATAGGTGATTAA 1671 0.4327 MAISTDADELRALLSEQSNELVRAQTIDSDLDVAFELQMQEAIDASLASQLSASTLAPSTSSASTLAPSTSSVSLTEGGIDASVLGLATTFLLEDLQSFTQRLADHEKCQSEMEKTVEDLDRRIFDQKFARDILNIPDHEWENYGDNFHRPYYNDGASSSSSSSSLRSPSLQTENFKLYFKGLVSEERVMDNRVVVASAGIAICDSRDSLIFEVKKPLEAVETGGLVLSGECAELQALIEGLDMAFSLGLQRITFFCDDSMLYQYVTARESVSHGKLGGLVKQVFHLQEKFVSCVPSLVGRNDIKYAFKSARDSIVSQITWSEETDNGKILKETCVICFEDTDVDKIFSVNNCLHRYCFSCMKKHVEVKLLNGMMANCPHDGCKSEVKVDSCRNFLAPELVEVISQRINESAIPVTEKVYCPFPRCSALMSKHELLEYTKTSFFGAEQSGARKCMKCLQFFCINCGVPWHYNMICHDYKRSNHYLQAADTKLKSLASSKLWRQCVKCSHIVELAEGCYHITCRCGYEFCYTCGAEWMNKKATCSCPIWDERNIIGD 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach3g00273 556 CDD Rcat_RBR_unk 501 536 - -
Bach3g00273 556 Pfam IBR domain, a half RING-finger domain 417 475 IPR002867 GO:0008270
Bach3g00273 556 Pfam IBR domain, a half RING-finger domain 492 543 IPR002867 GO:0008270
Bach3g00273 556 FunFam RBR-type E3 ubiquitin transferase 176 318 - -
Bach3g00273 556 SMART ibrneu5 489 545 IPR002867 GO:0008270
Bach3g00273 556 SMART ibrneu5 402 475 IPR002867 GO:0008270
Bach3g00273 556 CDD BRcat_RBR_unk 415 478 - -
Bach3g00273 556 Gene3D - 175 315 IPR036397 GO:0003676
Bach3g00273 556 ProSitePatterns Zinc finger RING-type signature. 353 362 IPR017907 -
Bach3g00273 556 ProSiteProfiles TRIAD supradomain profile. 331 549 IPR044066 -
Bach3g00273 556 FunFam RBR-type E3 ubiquitin transferase 473 556 - -
Bach3g00273 556 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 330 414 IPR013083 -
Bach3g00273 556 Pfam Reverse transcriptase-like 196 312 IPR002156 GO:0003676|GO:0004523
Bach3g00273 556 ProSiteProfiles Zinc finger RING-type profile. 335 381 IPR001841 -
Bach3g00273 556 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 169 544 IPR031127 GO:0004842|GO:0016567
Bach3g00273 556 Coils Coil 7 27 - -
Bach3g00273 556 Gene3D - 473 555 - -
Bach3g00273 556 SUPERFAMILY RING/U-box 491 551 - -
Bach3g00273 556 SUPERFAMILY RING/U-box 334 414 - -
Bach3g00273 556 FunFam RBR-type E3 ubiquitin transferase 331 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach3g00273 Bach-Chr3 7958279 7960898 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach3g00273 169 534 C3H Transcription Factor Family AT2G19610 39.024 1.34e-86 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach3g00273 - - qsa:O6P43_000295 773.852