Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bach3g00272 | ATGGACTCATCGGGAGACTTTCAGTCCTCACTGTCCGACCAACGCCGGGAACTGATGGCTGCAGAAGCCGTGGAATCCGACTTCGAGTTCGCCTTTCGTCTCCAGTTGCAAGAAGCGCTCGATGCCTCCCTCGCCTTGGAGCCCTCGTCTTCTTCTTCTTCCGTAAAAGAATTCCAATTCACAAAAAACGATGACGTTTTGAGGGTCACAACCCTTCAATCCGAGGAGTTGGCTAAGCTTGAGCAACAAATCAAGGACCGCGAACAGAGTGAGATCCAAATGCGCAAACTCAAGGAGGATCTCTGCCGTCGGATACATGATCAGAAGGTTGCCAGGGAGATTCTGAGAATTCCCGAGGATGATTGGAGAGAATGGGGTGACAATTTTGAGAAACCTTTGATCGAGGGCTGTTCGAGTTCAAAACATGGACCTTTAGGGAGCAATGATACCATTTTTAGATTGTACTTCAAAGGGTTGGTGAGCCAGGAGACGATTAAGGGTGAAAAGACCGTTTTAGCGGGGATTGGGATTGCGATTTGTGACCCCATGGACAATTTGATATTCGAGGTAAGGAAGCCACTGCTTGGGGATGGATTGAGTAAAACTGCTGCAGAGGCTAAGGCTTTAATTGAAGGCCTTAATGCTGCTATTGCTTTGGACTTGAACCGTATCACGTATTGTTGCACCTACTATCCGCTGTACCAATTTGTAAGTGGAAGATGGCCTCCAAAACAGAGGAAGATTGCCATGCTAGTTAATCAGGTGACTCTGCTTCAAAGAAAATTTACATACTGCAATCCAAAGCTTGTGCCTGGAAAGGATCTTAAATTTGCATTTAAGTTCGCAAAAGATGCAATTATGTCACAGATCACAATGCCCGCAGAATCTAGCTGCACAAAGAATCTGAATGAGACTTGTGTCATATGTTTGGAAGATACTGATGTTAGTCACATTTTTTCAGTTGATGGCTGTCAACACCGGTATTGCTTTTCTTGCATGAAACAACATGTGGAGGTGAAGTTGCTTCATGGAATGGTGCCAAAATGCCCTCATGAAGGATGCAATTCTGAGCTTGTCATCGACAGCTGCAGGAAATTCTTGACTCATAAATTAATTGAGACAATGCAGAATCAAATAAAGGAAGCATCAATTCCTGTTTCTGAGAAAATTTATTGCCCTTACCCAACATGCTCTGCATTAATGTCAAAAACTCAGATTTTGGATTCTGCTAAAAAGAAGTTTGGCGACCCTGAACAGTCAGGACCCAAGAATTGCATAAAATGTCATGGTCTTTTCTGTCTCAGTTGCAAGGTCCCTTGGCATAGCGGTCAGACATGCAGGGCTTACAAAATGTTGAATCCTAACCCTCCTGCTGAAGATTTGAAGCTGAAATCTCTCGCAACAAGGAGTTTATGGCGGCAGTGTGTGAAGTGCAACCATATGATTGAACTTGCTGAAGGTTGCTATCACATGACTTGCAGATGCGGTTATGAATTTTGCTATAACTGTGGAGCTGAATGGAAGAACAAGAAAGCAACATGTTCTTGTCCACTTTGGGATGAGGACAATATTTGGTTGGAGGATCATGAGGGGGACTCGGATGAGGAGGAAGAAGATGATGATGATGATGAAGATGAAGAGGAATATTATGAATCTGATTTTTCTTATGACTAA | 1674 | 0.4367 | MDSSGDFQSSLSDQRRELMAAEAVESDFEFAFRLQLQEALDASLALEPSSSSSSVKEFQFTKNDDVLRVTTLQSEELAKLEQQIKDREQSEIQMRKLKEDLCRRIHDQKVAREILRIPEDDWREWGDNFEKPLIEGCSSSKHGPLGSNDTIFRLYFKGLVSQETIKGEKTVLAGIGIAICDPMDNLIFEVRKPLLGDGLSKTAAEAKALIEGLNAAIALDLNRITYCCTYYPLYQFVSGRWPPKQRKIAMLVNQVTLLQRKFTYCNPKLVPGKDLKFAFKFAKDAIMSQITMPAESSCTKNLNETCVICLEDTDVSHIFSVDGCQHRYCFSCMKQHVEVKLLHGMVPKCPHEGCNSELVIDSCRKFLTHKLIETMQNQIKEASIPVSEKIYCPYPTCSALMSKTQILDSAKKKFGDPEQSGPKNCIKCHGLFCLSCKVPWHSGQTCRAYKMLNPNPPAEDLKLKSLATRSLWRQCVKCNHMIELAEGCYHMTCRCGYEFCYNCGAEWKNKKATCSCPLWDEDNIWLEDHEGDSDEEEEDDDDDEDEEEYYESDFSYD | 557 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bach3g00272 | 557 | Gene3D | - | 444 | 555 | - | - | |
| Bach3g00272 | 557 | Coils | Coil | 80 | 100 | - | - | |
| Bach3g00272 | 557 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 144 | 523 | IPR031127 | GO:0004842|GO:0016567 | |
| Bach3g00272 | 557 | FunFam | RBR-type E3 ubiquitin transferase | 444 | 557 | - | - | |
| Bach3g00272 | 557 | CDD | Rcat_RBR_unk | 472 | 507 | - | - | |
| Bach3g00272 | 557 | FunFam | RBR-type E3 ubiquitin transferase | 301 | 386 | - | - | |
| Bach3g00272 | 557 | FunFam | RBR-type E3 ubiquitin transferase | 152 | 289 | - | - | |
| Bach3g00272 | 557 | Gene3D | - | 153 | 292 | IPR036397 | GO:0003676 | |
| Bach3g00272 | 557 | Pfam | IBR domain, a half RING-finger domain | 381 | 446 | IPR002867 | GO:0008270 | |
| Bach3g00272 | 557 | Pfam | IBR domain, a half RING-finger domain | 461 | 514 | IPR002867 | GO:0008270 | |
| Bach3g00272 | 557 | Pfam | Reverse transcriptase-like | 168 | 285 | IPR002156 | GO:0003676|GO:0004523 | |
| Bach3g00272 | 557 | ProSiteProfiles | Zinc finger RING-type profile. | 306 | 350 | IPR001841 | - | |
| Bach3g00272 | 557 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 300 | 385 | IPR013083 | - | |
| Bach3g00272 | 557 | ProSiteProfiles | TRIAD supradomain profile. | 302 | 526 | IPR044066 | - | |
| Bach3g00272 | 557 | SUPERFAMILY | RING/U-box | 304 | 385 | - | - | |
| Bach3g00272 | 557 | MobiDBLite | consensus disorder prediction | 527 | 557 | - | - | |
| Bach3g00272 | 557 | SMART | ibrneu5 | 373 | 446 | IPR002867 | GO:0008270 | |
| Bach3g00272 | 557 | SMART | ibrneu5 | 459 | 516 | IPR002867 | GO:0008270 | |
| Bach3g00272 | 557 | SUPERFAMILY | RING/U-box | 460 | 523 | - | - | |
| Bach3g00272 | 557 | CDD | BRcat_RBR_unk | 386 | 449 | - | - | |
| Bach3g00272 | 557 | ProSitePatterns | Zinc finger RING-type signature. | 324 | 333 | IPR017907 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Bach3g00272 | Bach-Chr3 | 7953802 | 7956811 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Bach3g00272 | 117 | 505 | C3H Transcription Factor Family | AT2G19610 | 33.501 | 4.86e-66 | 219 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bach3g00272 | - | - | qsa:O6P43_000294 | 775.393 |