Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach3g00242 ATGGCTAGAGGGAAGAAGAAACACTTAAAGAGGCTGAAAGCCCCGAGGCACTGGATGCTTGATAAGCTTGGGGGTGCTTTTGCACCAAAGCCATCTCCTGGACCTCATAAGCTAAGGGAGTGTTTGCCACTGGTCCTAATTCTGAGAAACAAGCTCAAATATGCACTAGCATACCGTGAGGTCGTTTCCATTCTGATGCAGCGACATGTTCTAGTTGATGGAAAAGTTAGAACTGATCAGAAATACCCTGCTGGATTTATGGATGTTGTATCCATTCCCAAAACAAATGAGAACTTCCGACTGCTTTATGATGTCAACGGCCGTTTTCGCCTGCGCTCCATAACAGAAAATGAAGCAAAGTTTGAAGTTGGAAATGTTGCGATGGTGACTGGTGGGAGAAACAGGGGACGAGTTGGAATCGTCAAGGGGAAGGAAAAGCATCTGGGTACCTTCGACATCATCCATGTACAGGATGCAGTTGGTCATGAGTTTGCAACTCGTTTGGAAAACGTTTTCATTATTGGGCAGGGCTCAAAACCATGGGTATCTCTACCTAAAGGCAAGGGTATCAAGTTGAGTATTATTGAAGAGCAAAAGATGAGACGTGAGGCAGAAATCTTGGCTTCCTCCGCATGA 636 0.4544 MARGKKKHLKRLKAPRHWMLDKLGGAFAPKPSPGPHKLRECLPLVLILRNKLKYALAYREVVSILMQRHVLVDGKVRTDQKYPAGFMDVVSIPKTNENFRLLYDVNGRFRLRSITENEAKFEVGNVAMVTGGRNRGRVGIVKGKEKHLGTFDIIHVQDAVGHEFATRLENVFIIGQGSKPWVSLPKGKGIKLSIIEEQKMRREAEILASSA 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach3g00242 211 FunFam 40S ribosomal protein S4 121 191 - -
Bach3g00242 211 CDD S4 59 103 - -
Bach3g00242 211 FunFam 40S ribosomal protein S4 1 117 - -
Bach3g00242 211 PANTHER 30S/40S RIBOSOMAL PROTEIN S4 2 121 IPR000876 GO:0003735|GO:0005840|GO:0006412
Bach3g00242 211 Pfam RS4NT (NUC023) domain 3 39 IPR013843 -
Bach3g00242 211 SMART s4_6 42 106 IPR002942 GO:0003723
Bach3g00242 211 Pfam Ribosomal family S4e 95 132 IPR013845 -
Bach3g00242 211 Pfam S4 domain 44 90 IPR002942 GO:0003723
Bach3g00242 211 Gene3D - 1 117 IPR036986 GO:0003723
Bach3g00242 211 ProSitePatterns Ribosomal protein S4e signature. 8 22 IPR018199 -
Bach3g00242 211 CDD KOW_RPS4 121 175 IPR041982 -
Bach3g00242 211 Gene3D - 121 191 IPR014722 -
Bach3g00242 211 ProSiteProfiles S4 RNA-binding domain profile. 59 105 - -
Bach3g00242 211 Pfam 40S ribosomal protein S4 C-terminus 158 204 IPR032277 -
Bach3g00242 211 PIRSF RPS4a_RPS4e 1 123 IPR000876 GO:0003735|GO:0005840|GO:0006412
Bach3g00242 211 PIRSF RPS4a_RPS4e 118 187 IPR000876 GO:0003735|GO:0005840|GO:0006412
Bach3g00242 211 SMART kow_9 120 147 IPR005824 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach3g00242 Bach-Chr3 7369224 7370738 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach3g00242 1 208 Cytoplasmic Ribosomal Protein Gene Family AT5G58420 57.252 5.87e-100 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach3g00242 K02987 - bvg:104883961 304.293