Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bach3g00165 | ATGAATCCGTTAACCCTAGTCAAACGCATTCAGAATATCAATTCGAAAGAAGCGGCACTTGGCATTAGTGAGGAAGCTTCCTGGCATGCCAAGTACAAAGATTCCGCTTATGTATTCGTCGGTGGCATTCCTTTTGATCTTACAGAGGGTGATCTCCTCGCCGTTTTCGCTCAATATGGGGAGGTTGTTGATGTTAATCTTATTAGGGACAAAGGTACTGGGAAATCAAAAGGTTTTGCATTCCTTGCATATGAAGATCAAAGAAGCACAAATCTTGCTGTAGATAATCTGAATGGGGCACAGATTTTAGGTAGAATCATCAGGGTTGATCATGTCAATAAATATAAAAAGAAGGAGGAGGAAGATGAAGAAACAGAGCGGCAGAAGAGGGAAGCTCGTGGTGTTTGTCGGGCCTTCCAAAGAGGTGAATGTACTCGAGGATCTGGCTGCAAATTTTCTCATGATGAGCAAAGAGCTGCTAACACAGGGTGGGGCCATGAGGATGATAGTAAAAAATGGGGTCATGACAAATTTGAGGGTCCCAAGAAAGAGAAAAGATCTGGTGGCAACCAGTCAAATCTTATTGCAGAAACCAGAGAACAAGGTTCACGCTCCAGAGCTCATGGAAATGAAAAAGGGTCAGAAAGCCAATCCAAACAAAGTGATGGGAGAGAGGAAAGGGTAATTCAGAGGCATTATGATAAATTTGAAGGAAGAGAAAATTATGGTCGAAAAGAAGAAAAGAGATCAAGGAAACATGAAGATGATCAATTTGAACCTAGATCAAGGGAAGATTGGAATATGAAGGAAGAGAAAAGATCAAGGCATGATTATGGTGATATGGAACATGAGCCAAGAGATCAGCGTCAGAGGGAAGACAAGAGGTCCAGAAGGCAAGATGATCTTGATTCTGAACCTAAATCTAGAGACTCTGATAGAAGGGCAGAAAAGAAATCGAGGATGCGGGATGATGATGATTTTGAAAGTAGGTCAAGGCGGGATAGGGGTAACAGGGAAGAAAGAAGATCAAGGATGGGGGGTGAAAATGAATTTGCACCAAGTTTAAGGAAACATTATGATAAAAAAGCAAGAGAACAAATCGTATAA | 1107 | 0.4155 | MNPLTLVKRIQNINSKEAALGISEEASWHAKYKDSAYVFVGGIPFDLTEGDLLAVFAQYGEVVDVNLIRDKGTGKSKGFAFLAYEDQRSTNLAVDNLNGAQILGRIIRVDHVNKYKKKEEEDEETERQKREARGVCRAFQRGECTRGSGCKFSHDEQRAANTGWGHEDDSKKWGHDKFEGPKKEKRSGGNQSNLIAETREQGSRSRAHGNEKGSESQSKQSDGREERVIQRHYDKFEGRENYGRKEEKRSRKHEDDQFEPRSREDWNMKEEKRSRHDYGDMEHEPRDQRQREDKRSRRQDDLDSEPKSRDSDRRAEKKSRMRDDDDFESRSRRDRGNREERRSRMGGENEFAPSLRKHYDKKAREQIV | 368 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bach3g00165 | 368 | CDD | RRM_ist3_like | 27 | 112 | IPR045844 | GO:0000398|GO:0003723 | |
| Bach3g00165 | 368 | SUPERFAMILY | RNA-binding domain, RBD | 27 | 116 | IPR035979 | GO:0003676 | |
| Bach3g00165 | 368 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 135 | 155 | IPR000571 | GO:0046872 | |
| Bach3g00165 | 368 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 36 | 114 | IPR000504 | GO:0003723 | |
| Bach3g00165 | 368 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 38 | 107 | IPR000504 | GO:0003723 | |
| Bach3g00165 | 368 | SMART | rrm1_1 | 37 | 110 | IPR000504 | GO:0003723 | |
| Bach3g00165 | 368 | ProSiteProfiles | Zinc finger C3H1-type profile. | 130 | 157 | IPR000571 | GO:0046872 | |
| Bach3g00165 | 368 | PANTHER | RNA-BINDING MOTIF PROTEIN, X-LINKED 2 | 1 | 269 | - | - | |
| Bach3g00165 | 368 | FunFam | Zinc finger CCCH domain-containing protein 25 | 26 | 130 | - | - | |
| Bach3g00165 | 368 | Gene3D | - | 26 | 132 | IPR012677 | - | |
| Bach3g00165 | 368 | Coils | Coil | 115 | 135 | - | - | |
| Bach3g00165 | 368 | Gene3D | - | 133 | 221 | - | - | |
| Bach3g00165 | 368 | FunFam | Uncharacterized protein | 127 | 204 | - | - | |
| Bach3g00165 | 368 | MobiDBLite | consensus disorder prediction | 201 | 368 | - | - | |
| Bach3g00165 | 368 | MobiDBLite | consensus disorder prediction | 161 | 186 | - | - | |
| Bach3g00165 | 368 | SUPERFAMILY | CCCH zinc finger | 133 | 155 | IPR036855 | GO:0046872 | |
| Bach3g00165 | 368 | SMART | c3hfinal6 | 132 | 156 | IPR000571 | GO:0046872 | |
| Bach3g00165 | 368 | MobiDBLite | consensus disorder prediction | 161 | 368 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Bach3g00165 | Bach-Chr3 | 3276117 | 3285167 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Bach3g00165 | 18 | 109 | Eukaryotic Initiation Factors Gene Family | AT2G36660 | 28.261 | 3.56e-06 | 47.0 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bach3g00165 | K13107 | - | gmx:100814734 | 471.855 |