Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach3g00160 ATGGCCGTCAAACCCTCAAGAGCCCAGAAAAAAATCAATTACGATCAAAAGCTATGTCGACTTCTCGGCGAGTATTCTCAGATACTCATAGTCGGTGCCGATAACGTTGGTTCGAAGCAAATGCAGGATATTCGCAGGGGCATCCGAGGTGACTCTATCATCTTGATGGGGAAGAACACCATGATGAAACGATCCATCAAGAGGCATGCTGAGATGACTGGAAACGAGGCCGTACGGAGTCTCATTCCTCTGCTAGTGGGAAATGTGGGAATGATATTCACGAAGGGTGATTTGAAGGAAGTGAGAGACGAGATTGCCAAATACAAGGTGGGAGCTCCAGCACGTGTTGGCCTCGTGGCTCCAATTGATGTTATTGTGCCCCCAGGAAACACCGGACTCGATCCTTCACAGACTTCTTTCTTTCAGGTTCTCAACATTGCAACTAAGATCAACAAAGGGACTGTTGAAATTATTTCCTCGGTGGAAATCATTAAGCAAGGTGAGAAGGTGGGTTCATCTGAGGCTGCCCTCCTATCCAAGCTTGGGATAAGACCATTTTCATATGGCCTTATTGTCACCAATATTTATGACAACGGATCAATCTTCAGCCCTGCAGTTCTTGATCTTACTGAAGATGACCTTATTGCAAAGTTTGCTGCTGGGGTTTCCATGGTCACCTCATTGTCCTTAGCCGTCTCATACCCATCGCTTGCTGCAGCTCCGCACATGTTTATCAATGGATACAAGAATGCTCTGGCTATTGCCGTGGCTACAGAGTACAACTTCCGTCAAGCAGATGAAGTCAAGGAGTACTTGAAGGATCCAAGCAAGTTCACAGCTGCCATGGCTTCTGCAGCTGCTGTTTCTTATGCTGAGCCTGCTCCTGTTGCAGCAACGAAGGAGAAGAAGGAAGAACCAGAGGAAGAATCTGACGATGAGCCTATGCTTAATTTGTTTGACTGA 963 0.4673 MAVKPSRAQKKINYDQKLCRLLGEYSQILIVGADNVGSKQMQDIRRGIRGDSIILMGKNTMMKRSIKRHAEMTGNEAVRSLIPLLVGNVGMIFTKGDLKEVRDEIAKYKVGAPARVGLVAPIDVIVPPGNTGLDPSQTSFFQVLNIATKINKGTVEIISSVEIIKQGEKVGSSEAALLSKLGIRPFSYGLIVTNIYDNGSIFSPAVLDLTEDDLIAKFAAGVSMVTSLSLAVSYPSLAAAPHMFINGYKNALAIAVATEYNFRQADEVKEYLKDPSKFTAAMASAAAVSYAEPAPVAATKEKKEEPEEESDDEPMLNLFD 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach3g00160 320 CDD Ribosomal_P0_L10e 9 185 - -
Bach3g00160 320 Gene3D - 114 185 IPR043164 -
Bach3g00160 320 Pfam 60s Acidic ribosomal protein 235 313 - -
Bach3g00160 320 MobiDBLite consensus disorder prediction 290 320 - -
Bach3g00160 320 Pfam Ribosomal protein L10 8 108 IPR001790 -
Bach3g00160 320 Gene3D - 6 209 IPR043141 -
Bach3g00160 320 MobiDBLite consensus disorder prediction 306 320 - -
Bach3g00160 320 Pfam Insertion domain in 60S ribosomal protein L10P 114 183 IPR040637 -
Bach3g00160 320 PIRSF L10E 1 320 IPR030670 GO:0042254
Bach3g00160 320 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P0 4 304 - -
Bach3g00160 320 SUPERFAMILY Ribosomal protein L10-like 9 134 IPR043141 -
Bach3g00160 320 FunFam 60S acidic ribosomal protein P0 113 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach3g00160 Bach-Chr3 3246310 3248546 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach3g00160 1 284 Cytoplasmic Ribosomal Protein Gene Family AT2G40010 75.352 1.49e-165 461
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach3g00160 K02941 - qsa:O6P43_014014 469.544