Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach3g00131 ATGTGGTTTAGAAAAGATGGCAGCAACAAAAGGAAAGAACAAGAAGAAGAGAGATCCAGACGCAGAGGTTTTACGCAACACGGTCCATCAAGAGAGATCGCTCGCCTGCCATCTACACCGATGATGTCATATTCCAGGAGATCAAGATATTCTCGTTCTCCTTCCCCATACAAGCGCTACAGGTCTGTCTCCAGGTCTTTATCAAGGTCAAGACGGTCAAGAAGCCTATCAAGTGATGCAGAGAATCCTGGCAACAATTTGTACGTGACAGGTTTGTCTCCTCGGATCACTAAGAGAGAACTGGAGAAGCATTTTGCAACGGAGGGAAAAGTGATAGATGTTCATCTAGTTGTTGATCCATGGACGAGAGAATCACGTGGATTTGGGTTTGTGACAATGGAAACTGTTGAGGATGCTGATCGATGCATAAAGTATATGGATCGCTCTGTCATTGAAGGGCGTGTCATCACAGTGGAGAAGGCCAGAAGGCGCCGGGGTAGAACTCCAACTCCTGGGAAGTATCTTGGTTTGAGGACTGTTCGTGGACGTCGCCGCAGTCCTAGTTATTCTCCTTACAGTCGCAGTCGGAGCCGTTCGCCATATTCCTCAGATCGTAGTAGGAGCCGTTCTTACTCTGGCAGTCCAAGGAGGAGGTCCTATTCCCCTTACCGTAGTGGACGCAGATCCTATTCTCCTTATGACAGGCGCCACCAGTCCTATTCTCGGTCTCGGTCTCCTTATAGTAGGTCACCTGTCAGTCGGAGGCGTGAGAGGTCATACTCCCCGTATGATTCAAGGCATGATTCACCTGATGATCACTACTATAGAAGGCACCGTTATAGGTCTGTGTCACCCGATGATCGCCACTACAGAAGGCATTATTATAGGTCCGTTTCACCTGAGGATCGCTATTATAGAAGGCACCGTTATAGGTCAGTTTCTCGAAGTGCCTCACCAAGGCGAAGGAGAAGTTCAAGGTACACTCCCAGCATCTCACCTGTGAGAAGGCGAAGCTCAAGAAGAAGCTACTCTCCAAGTGTTTCCCCTAGTCCACGGAGGAGTTCACGGCGGAGTAACTCTGGGAAACGTCGAAGTTACTCTATAAGTTCCAGTGTGAGTGCAAGTTCAAGGTCTGTATCAAGGTCTTTGAGTCGTGGATCTCCTTCGCCTTCAAGTTGA 1179 0.4869 MWFRKDGSNKRKEQEEERSRRRGFTQHGPSREIARLPSTPMMSYSRRSRYSRSPSPYKRYRSVSRSLSRSRRSRSLSSDAENPGNNLYVTGLSPRITKRELEKHFATEGKVIDVHLVVDPWTRESRGFGFVTMETVEDADRCIKYMDRSVIEGRVITVEKARRRRGRTPTPGKYLGLRTVRGRRRSPSYSPYSRSRSRSPYSSDRSRSRSYSGSPRRRSYSPYRSGRRSYSPYDRRHQSYSRSRSPYSRSPVSRRRERSYSPYDSRHDSPDDHYYRRHRYRSVSPDDRHYRRHYYRSVSPEDRYYRRHRYRSVSRSASPRRRRSSRYTPSISPVRRRSSRRSYSPSVSPSPRRSSRRSNSGKRRSYSISSSVSASSRSVSRSLSRGSPSPSS 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach3g00131 392 SMART rrm1_1 86 159 IPR000504 GO:0003723
Bach3g00131 392 CDD RRM_SF 87 159 - -
Bach3g00131 392 Gene3D - 4 169 IPR012677 -
Bach3g00131 392 MobiDBLite consensus disorder prediction 41 87 - -
Bach3g00131 392 FunFam Serine/arginine-rich splicing factor SR45a 43 169 - -
Bach3g00131 392 MobiDBLite consensus disorder prediction 161 280 - -
Bach3g00131 392 MobiDBLite consensus disorder prediction 306 392 - -
Bach3g00131 392 MobiDBLite consensus disorder prediction 250 280 - -
Bach3g00131 392 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 80 294 - -
Bach3g00131 392 MobiDBLite consensus disorder prediction 323 392 - -
Bach3g00131 392 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 85 163 IPR000504 GO:0003723
Bach3g00131 392 MobiDBLite consensus disorder prediction 186 219 - -
Bach3g00131 392 MobiDBLite consensus disorder prediction 1 87 - -
Bach3g00131 392 MobiDBLite consensus disorder prediction 1 28 - -
Bach3g00131 392 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 87 156 IPR000504 GO:0003723
Bach3g00131 392 SUPERFAMILY RNA-binding domain, RBD 75 188 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach3g00131 Bach-Chr3 2509535 2514756 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach3g00131 65 167 Eukaryotic Initiation Factors Gene Family AT2G23350 33.333 2.11e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach3g00131 - - gmx:100805126 236.498