LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bach3g00122	ATGTTTCCCGGTCAGTCCAGGCTTCATTCACCTTACCTCTTCTTTATTTCACAGGGGTCAGTTCAAGTTTCTCACCCACGCAGAGATAGTCCGTTGCGGGGAGCCTCAGAACCTTCCAACATGAAGTTTAATATTGCAAATCCCACCACTGGTTGCCAGAAGAAGCTGGAGATCGATGACGACCAGAAACTTCGAGCATTTTGGGACAAGCGTATTTCCCAAGAAGTTAGTGGTGATTCCTTGGGTGAGGAATTTAGAGGTTATATCTTCAAGATTACTGGAGGGTGTGACAAACAAGGATTTCCAATGAAGCAGGGAGTGTTGACCCCTGGTCGAGTTCGTCTCTTGCTGCACAGAGGAACTCCATGCTTCCGTGGATATGGACGGCGTAATGGAGAACGTAGGAGGAAGTCTGTTCGTGGGTGCATTGTGAGCCCAGACCTCTCTGTTCTGAACTTGGTTATTGTGAAGAAGGGTGAAAGTGATTTGCCAGGCCTGACAGACATTGAAAAGCCAAGGATGAGAGGTCCAAAGAGAGCTTCCAAAATCCGTAAGTTGTTCAACCTGTCAAAGGAGGATGATGTGAGGAAGTATGTCAACACTTACAGGCGAACCTTTACTACAAAATCTGGGAAAAAGGTGAGCAAGGCTCCAAAAGTACAAAGATTGGTCACTCCTTTGACTCTCCAAAGAAAGCGTGCAAGGATTGCAGAAAAGAAGAAGAGAATCGCCAAGGCTAAGTCAGAGGCAGCTGAGTACCAGAAACTTCTTGCCTCCAGGTTGAAGGAGCAGAGGGAACGCCGCAGTGAGAGTTTGGCAAAGAGGAGATCCAAGCTTTCCAGTGCTTCTAAGCCATCTGTTGCTGCATAAGCTGCTTTCGGGATTTGGTGAAGTTTGATCTTCACTATAGTTTTGGGTAGTGTCATTCCATGATGCATTTGTTATGATGAGTTTTTACCGCTTGCAATTAAGATACCTTCAATCTGTTTAGATCTTTAGTTATGTTTTGTTTGACATTTCACATGGAGTTATTTTTACTAATTTAGTTAAAATTATGGCACCTTGGTTTA	1070	0.4449	MFPGQSRLHSPYLFFISQGSVQVSHPRRDSPLRGASEPSNMKFNIANPTTGCQKKLEIDDDQKLRAFWDKRISQEVSGDSLGEEFRGYIFKITGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGESDLPGLTDIEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKSGKKVSKAPKVQRLVTPLTLQRKRARIAEKKKRIAKAKSEAAEYQKLLASRLKEQRERRSESLAKRRSKLSSASKPSVAA	289

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bach3g00122	289	Gene3D	-	173	274	-	-
	Bach3g00122	289	Pfam	Ribosomal protein S6e	41	168	IPR001377	GO:0003735\|GO:0005840\|GO:0006412
	Bach3g00122	289	Coils	Coil	229	256	-	-
	Bach3g00122	289	MobiDBLite	consensus disorder prediction	260	289	-	-
	Bach3g00122	289	ProSitePatterns	Ribosomal protein S6e signature.	92	103	IPR018282	GO:0003735\|GO:0005840\|GO:0006412
	Bach3g00122	289	PIRSF	RPS6e	41	289	IPR014401	GO:0003735\|GO:0005840\|GO:0006412
	Bach3g00122	289	PANTHER	40S RIBOSOMAL PROTEIN S6	41	280	IPR001377	GO:0003735\|GO:0005840\|GO:0006412
	Bach3g00122	289	SMART	Ribosomal_S6e_2	41	168	IPR001377	GO:0003735\|GO:0005840\|GO:0006412
	Bach3g00122	289	MobiDBLite	consensus disorder prediction	260	277	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bach3g00122	Bach-Chr3	2317025	2319707	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bach3g00122	41	289	Cytoplasmic Ribosomal Protein Gene Family	AT5G10360	70.683	9.55e-119	337

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bach3g00122	K02991		-	gmx:100786559	402.905