Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach3g00078 ACCAAATCAGTAATCTCTTCAGCTCCAATCCACATGGCCATGAAGAGACAAAGAGAAAATGAAGCAACAGAAACCTTAGACTTGGCAAATTCTCTAATCTTGCTCTCCGAACCCAGAGAAAGCAAGCCCCAGAGAGGTTCAGGCTCAGTCCCTGATCAAGTATTTGAGTGCAAGACCTGCAACCGCAAGTTCTCTTCTTTTCAAGCTCTGGGTGGCCACAGGGCTAGCCACAAGAAGCAAAAGCTAGACCAGGAAGACCTAAAGGCGGTGGCTAAGTCTCTGAGCTTGGGAAACAAACCCAAGATGTATGAATGCTCCATCTGTGGTCTTGAATTTTCTCTGGGTCAAGCACTGGGTGGCCACATGAGGAAGCATAGAGATGTCATCAACCAAGGGCTTTATACCATAAACCAGATCTCTGCTAAAGTCCCGGTTCTGAAAAGATCTAACAGCAAGAGGATTTCCTGCTTGGATCTTAACTTGACGCCATTGGAGAATGATTTGAAGTTACTGTTTGGAGAGAAGGCACCTCAAGTTCATCTTTCTTTGGTGTGAATGGCCATGAAGAGACAAAGAGAAAATGAAGCAACAGAAACCTTAGACTTGGCAAATTCTCTAATCTTGCTCTCCGAACCCAGAGAAAGCAAGCCCCAGAGAGGTTCAGGCTCAGTCCCTGATCAAGTATTTGAGTGCAAGACCTGCAACCGCAAGTTCTCTTCTTTTCAAGCTCTGGGTGGCCACAGGGCTAGCCACAAGAAGCAAAAGCTAGACCAGGAAGACCTAAAGGCGGTGGCTAAGTCTCTGAGCTTGGGAAACAAACCCAAGATGTATGAATGCTCCATCTGTGGTCTTGAATTTTCTCTGGGTCAAGCACTGGGTGGCCACATGAGGAAGCATAGAGATGTCATCAACCAAGGGCTTTATACCATAAACCAGATCTCTGCTAAAGTCCCGGTTCTGAAAAGATCTAACAGCAAGAGGATTTCCTGCTTGGATCTTAACTTGACGCCATTGGAGAATGATTTGAAGTTACTGTTTGGAGAGAAGGCACCTCAAGTTCATCTTTCTTTGGTGTGACCGAATTTTTTGTTATTTCTTTTTAGACATGATTGTATTCTTTAGATTCTTTTATGTAAATTGTTATCAACGAGGGTTTATTTTATTTTGTATATCAAGGGAATTCTTAATTTTAGCTGATTGATTGTTTACTC 1211 0.4352 MAMKRQRENEATETLDLANSLILLSEPRESKPQRGSGSVPDQVFECKTCNRKFSSFQALGGHRASHKKQKLDQEDLKAVAKSLSLGNKPKMYECSICGLEFSLGQALGGHMRKHRDVINQGLYTINQISAKVPVLKRSNSKRISCLDLNLTPLENDLKLLFGEKAPQVHLSLV 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach3g00078 173 ProSiteProfiles Zinc finger C2H2 type domain profile. 44 71 IPR013087 -
Bach3g00078 173 SMART c2h2final6 92 114 IPR013087 -
Bach3g00078 173 SMART c2h2final6 44 66 IPR013087 -
Bach3g00078 173 ProSitePatterns Zinc finger C2H2 type domain signature. 46 66 IPR013087 -
Bach3g00078 173 SUPERFAMILY beta-beta-alpha zinc fingers 43 114 IPR036236 -
Bach3g00078 173 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 114 IPR013087 -
Bach3g00078 173 ProSitePatterns Zinc finger C2H2 type domain signature. 94 114 IPR013087 -
Bach3g00078 173 PANTHER ZINC FINGER PROTEIN ZAT5 3 156 - -
Bach3g00078 173 Pfam C2H2-type zinc finger 92 116 - -
Bach3g00078 173 Pfam C2H2-type zinc finger 43 69 - -
Bach3g00078 173 Gene3D Classic Zinc Finger 73 142 - -
Bach3g00078 173 Gene3D Classic Zinc Finger 41 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach3g00078 Bach-Chr3 1365797 1366485 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach3g00078 3 173 C2H2 Transcription Factor Family AT2G37430 46.409 3.43e-43 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bach3g00078 zf-C2H2_6 1.4e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach3g00078 - - aprc:113870747 240.35