Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach3g00023 ATGGAGGTGATTTTGGCATCTTCTTCTGTTGACGGCGGTATTGGGTGTTGGGAGCTTGAGACAGGGGCTGAGCGCCTTCGCTACAAGTCCTGTGTCTCTCCACCTCATGGCCTCGTTTGTGTGGGCCACCGTTTCCTTGCGTCCTCTCAGCTCCGAGACTCTTCACTGTCCTCTGGCTTACTTCTTTACTGGTCCTACTCCAAGCCTCAAGTACAAGTTAAGAGCTTTCCAGCTGAACCAATTAAGCCGCTTGCTGCTAATCACCGTGGCACCTATATAGCTGGTGGAGGATTATCGGGTCACATATACTTTTGGGAGGTTGCAAGTGGCAGATTACTTAAGAAGTGGCATGCTCATTATAGGTCTGTTACATGCCTGGTCTTTAATGAAGATGACTCACTGTTGACATCTGGTTCAGAAGATGGATCTGTACGAGTTTGGAACCTGTTCATGATATTTGATGATTTAAGAGCGCGTGAAGCAAATCATCTTTATGAGCATAGTTTTTCAGAGCATACAATGCAAGTGACTGATGTTGCAATTGGTCATGGAGGGTATAATGCAATTATAGTGTCAGCTTCAGAGGATCGGACTTGCAAGGTGTGGAGCTTATCTAGAGGAACACTACTGAGAAATATAGTATTCCCTGCAATAATTGATGTCATTGCATTGGATCCGGCTGAACAATTCTTTTATGCTGGCAGTAGAGATGGAAAAATATTCACTGCTGCTCTTAATGCTGAAAGTGTCTCTAAAAGTGATTACGGAATGCATATTGTTGATTCATTCTCTAACCACAGCAAGGCGGTTACATGCATAGCATATGCTCCAAGTGGAAATTTGTTAGTATCTGGATCAGAGGATGGAATGATTCGTGTGTGGAATGCAAAAACTCATAACATCGTCCGCATGTTTAAGCATGGAAAAGGTCCTGTAAACAATATTCTTGTTGTTAGACAACAACTAGATTTGAGTAATCAAATGTCTCTTAATTCACAACCTTCCTCCAGAAAGCAGGGATCTTTATTACCCCCACCATTGGAAAAATATGCAAATTCAACAGATGAAAACTCATATGTCACTATCAGCCTCGAGGGTGGCAGATCTACAGATGTTTCATACCGCAGTGCTGATCTGTTCTTAAATCGGATTAAGGAGCTTCAGAGTTCTACTGCTGGTACTGAAATGGAGCTGGAGAAACTAAAACGTGATTACAATAGGTCGATGCAAATGGTTAACGAATGGAAGAAAATGTACGAGAACTTGCATCAATTCAGTGTAAATGAGCTTTTGGATGGTGGAAAAGCTGGAACATTAGATGAAAATGGCAACTAGGACATGTTATTGCTATATTTATGATGCTGTATAAATCTCCTTGACTCCCTTTGGTTTTTAATTAAAATTTTGTTATAGTTATAACATCCTTTGCTAGAGTGCAGACAAAATTCTAAATTCAA 1457 0.4111 MEVILASSSVDGGIGCWELETGAERLRYKSCVSPPHGLVCVGHRFLASSQLRDSSLSSGLLLYWSYSKPQVQVKSFPAEPIKPLAANHRGTYIAGGGLSGHIYFWEVASGRLLKKWHAHYRSVTCLVFNEDDSLLTSGSEDGSVRVWNLFMIFDDLRAREANHLYEHSFSEHTMQVTDVAIGHGGYNAIIVSASEDRTCKVWSLSRGTLLRNIVFPAIIDVIALDPAEQFFYAGSRDGKIFTAALNAESVSKSDYGMHIVDSFSNHSKAVTCIAYAPSGNLLVSGSEDGMIRVWNAKTHNIVRMFKHGKGPVNNILVVRQQLDLSNQMSLNSQPSSRKQGSLLPPPLEKYANSTDENSYVTISLEGGRSTDVSYRSADLFLNRIKELQSSTAGTEMELEKLKRDYNRSMQMVNEWKKMYENLHQFSVNELLDGGKAGTLDENGN 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach3g00023 444 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 263 298 - -
Bach3g00023 444 Gene3D - 1 215 IPR015943 GO:0005515
Bach3g00023 444 ProSiteProfiles Trp-Asp (WD) repeats profile. 116 149 IPR001680 GO:0005515
Bach3g00023 444 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 116 149 - -
Bach3g00023 444 PANTHER WD-REPEAT PROTEIN 18 2 431 IPR045227 -
Bach3g00023 444 ProSitePatterns Trp-Asp (WD) repeats signature. 282 296 IPR019775 -
Bach3g00023 444 PRINTS G protein beta WD-40 repeat signature 282 296 IPR020472 -
Bach3g00023 444 PRINTS G protein beta WD-40 repeat signature 135 149 IPR020472 -
Bach3g00023 444 PRINTS G protein beta WD-40 repeat signature 190 204 IPR020472 -
Bach3g00023 444 Pfam WD domain, G-beta repeat 260 295 IPR001680 GO:0005515
Bach3g00023 444 Pfam WD domain, G-beta repeat 167 203 IPR001680 GO:0005515
Bach3g00023 444 Pfam WD domain, G-beta repeat 111 148 IPR001680 GO:0005515
Bach3g00023 444 FunFam Protein ROOT INITIATION DEFECTIVE 3 1 242 - -
Bach3g00023 444 ProSitePatterns Trp-Asp (WD) repeats signature. 135 149 IPR019775 -
Bach3g00023 444 ProSiteProfiles Trp-Asp (WD) repeats profile. 169 212 IPR001680 GO:0005515
Bach3g00023 444 MobiDBLite consensus disorder prediction 328 354 - -
Bach3g00023 444 SUPERFAMILY WD40 repeat-like 5 317 IPR036322 GO:0005515
Bach3g00023 444 Gene3D - 216 336 IPR015943 GO:0005515
Bach3g00023 444 ProSiteProfiles Trp-Asp (WD) repeats profile. 263 304 IPR001680 GO:0005515
Bach3g00023 444 SMART WD40_4 256 295 IPR001680 GO:0005515
Bach3g00023 444 SMART WD40_4 162 203 IPR001680 GO:0005515
Bach3g00023 444 SMART WD40_4 206 244 IPR001680 GO:0005515
Bach3g00023 444 SMART WD40_4 109 148 IPR001680 GO:0005515
Bach3g00023 444 SMART WD40_4 69 106 IPR001680 GO:0005515
Bach3g00023 444 Coils Coil 384 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach3g00023 Bach-Chr3 406930 411212 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach3g00023 88 305 U-box Gene Family AT1G04510 24.545 5.42e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach3g00023 K14829 - qsa:O6P43_016055 643.654