Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach3g00017 ATGTCGAACCCTGAGACCGTGGCAGCGGGTGAGGTTGAGGACTTGTCCCTGACTATTACAACTACTGCTGAAGCTTCGCCAATTCGTTATCACATTGAGAACGCAAATGGGCAATCCTCCGTCAACCCCGCAACTGCCACCAAGCCTTATCCACCGCCGACGGCTCTCTATGACGAACTTGTTCAAAATTCGGACCTCTTTTGGGAAAAGCTCCGGTCTTTCCACGAATCCTCTGCTGCCAAATTTAAGGTTCCTATTATCGGAGGAAAGCCTCTAGATCTGTATCATCTTTTTATAGAAGTCACATCTCGTGGTGGTCTTGAAAAGATCATTGGCGATCGAAAATGGAAGGAAGTGATTGGGGCACTAAAATTGCCGAGCACCATAACCAGTGGATCATTTGTGTTACGCAAATACTATCTTTCATTGCTTTATCACTTTGAGCAGGTTTATTACTTTCGAAGGCAAGCTCCTCCTTTCAGACCTGACATTGTGGATGGAAACATTGCCAATACTTTGGCTACTAAGGAAGGTGCTACTGTGAATGATTTACCAGGTCAGGTTACAGTGACCGGCTCTTGGGTGACTGGCACTATTGATAAGAAATTTGACGGAGGATATGTAGTTACAGTGAATCTGGGTTCTGATCAGCTGCAGGGTGTACTGTATTATGTTCCTGCCGATGTATCTGAAAGTTCTTATACAGCAGGAATGCCTACTTCTCAGAATAGGAAGAGATCAAGATTGGCACTACGTGATCCTTCTCGCCCCAAGTCAAATAGGAGTGGTTACAATTTCTTCTTTGCTGAGCATTATGCCAAGCTAAAGCCTTTGTACTCCGGTCAAGAGAGAGCTATAAGCAAAAGGATTGGATCTTTGTGGAACAATCTCACAGAAGCAGAAAGACAGGTTTACCAGGATAAAGGACAGAGAGATAAGGAGAGATACAGGACTGAAATGTTGGAGTACAAATCCTCGTATGATCCAACGTCATAATAGGTTCCCATTTTGTAGGTTCCTAGACTGCTGTTTCAAAGGTTTTGTCCATCTTTCTTTGCTG 1060 0.4415 MSNPETVAAGEVEDLSLTITTTAEASPIRYHIENANGQSSVNPATATKPYPPPTALYDELVQNSDLFWEKLRSFHESSAAKFKVPIIGGKPLDLYHLFIEVTSRGGLEKIIGDRKWKEVIGALKLPSTITSGSFVLRKYYLSLLYHFEQVYYFRRQAPPFRPDIVDGNIANTLATKEGATVNDLPGQVTVTGSWVTGTIDKKFDGGYVVTVNLGSDQLQGVLYYVPADVSESSYTAGMPTSQNRKRSRLALRDPSRPKSNRSGYNFFFAEHYAKLKPLYSGQERAISKRIGSLWNNLTEAERQVYQDKGQRDKERYRTEMLEYKSSYDPTS 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach3g00017 331 CDD HMG-box_AtHMGB9-like 257 323 - -
Bach3g00017 331 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 257 324 IPR009071 -
Bach3g00017 331 SMART bright_3 62 153 IPR001606 GO:0003677
Bach3g00017 331 Pfam ARID/BRIGHT DNA binding domain 65 148 IPR001606 GO:0003677
Bach3g00017 331 Gene3D High mobility group box domain 240 331 IPR036910 -
Bach3g00017 331 SUPERFAMILY HMG-box 245 329 IPR036910 -
Bach3g00017 331 CDD ARID_HMGB9-like 63 148 IPR045303 GO:0003677
Bach3g00017 331 SMART ARID_2 58 148 - -
Bach3g00017 331 Pfam HMG (high mobility group) box 257 324 IPR009071 -
Bach3g00017 331 SMART hmgende2 256 325 IPR009071 -
Bach3g00017 331 MobiDBLite consensus disorder prediction 234 258 - -
Bach3g00017 331 ProSiteProfiles ARID domain profile. 61 152 IPR001606 GO:0003677
Bach3g00017 331 SUPERFAMILY ARID-like 60 160 IPR036431 GO:0003677
Bach3g00017 331 Gene3D - 57 161 IPR036431 GO:0003677
Bach3g00017 331 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 38 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach3g00017 Bach-Chr3 347834 353707 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach3g00017 31 328 ARID Transcription Factor Family AT3G13350 52.614 4.35e-104 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Bach3g00017 ARID 2.5e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach3g00017 - - qsu:111998428 408.683