LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bach2g02213	ATGGATGGGCGGCGGCATTCAGTTGACATTCCTATTTCTAAAACTCTTGTCGCATTGAGGAGAGTCAGGTCACTGAGGGATCCAACAACTAATTCTATGAGCAAACTCGCTTCTTTGATTGATAATGTTCACTGGGAAAACAGTTCGGGTAACGGAATTTCTCTGCGATTCTTGGATGCTTCGCATACTTGTGGTTCTGATGATAATGTCATTTTAAGATCAAGGAATTTAGGTTTAAAGGGATTAAGAGAGCAGGATGTTACTGATTTTGAATTGAATTCTGGCCTGTTGAACTCTGAGCTGAATTCTTTTGGGAACGCTTGTCATGAAAGGCAACAGGATGATGAGCTAGTTCACTCTAATTTGAATCAGGAAGGCGTTTCAGGAAACATGTCACCAAGTGAAAGCTGTTGTAGCAACCATAGGGGTAAGCGATTGGATTTGGCATGCATCACGCCTCCCCGTGATAATTTAAACGATGGAGATTCATGTTATGAAGCAAGTGCGGGATCATCACAATTAGGGAGAATAGAGCACTTTAAGTTGACTAGAAACTCTCTACGCAAAGATCAAGAGAAACCATCTGAGGGTGATATTGCAAGTCATGTAGGTAGTCCATGGCTTACTATTGGTGATACTCTATCAGGCCATAGTGCACCAACAAATATAAGCCGAGATGTGGATCCTGTAGATAACATTCACCAAGGATGTGGAATAAGCTGTTGTTGGTCGAAATCACCAAGATTTATGGAGTCAGGTCTTTATTCTGATTTAGAAGATCGTCCTTTGATGTCTCAGCACATTGATGAGATTGATCTTTATGGACATAGAAGCTTGAGACACATTTCTGGTGAACTTAGTCCAAGTTTGGAAACCCCTAGAAGTTTAACTTCGAAGTTCAGGCCAAAATCTTTTAGCGAGTTGGTGGGACAAAATGTAGTAGCAAGGTCTCTTTTGGGCGCTATCTCTATGGGAAGGATAATGTCTTTCTATCTCTTCCATGGTCCCCGTGGTACAGGCAAGACCTCTGCCGCTAGGATATTTGCTGCTGCACTGAATTGCCTCTCCCTTGAGGAGCAAAAGCCATGTGGTCTGTGCAGAGAATGTATTTTGTTCTTTTCTGGAAGAAGTACAGATGTTAAACAAGTGGATTCTTTGAGAATCAATCGTACGGACAAGGTTAAGTCTCTTGTTAAGAATGCTAGCATTCCCCCAGTTTCCTCACGTTTTAAGGTTTTCATTATTGACGAGTGCCAGTTGTTACATGGGGAAACATGGGCAAGTCTTTTGAATATTCTAGAGAATCTTTCTCAGCATGTAGTTTTTGTGATGATCACTCCTGATTTGGATAAGCTTTCCCGTAGTGCAATTTCCCGGGCTCAGAGGTATCACTTTCCAAAGATAAAAGATGCCGACATTGCAAGCAGATTGGAGCAAATTTGTGTTGAGGAATGTCTCGATTTTGAACAGGCTGCTTTGGACTTTATTGCTGCTAAATCCTGCGGGTCACTTAGGGATGCAGAAATTATGCTTGATCAGCTGAGTTTGCTTGGGAAAAAAATCACAGTTTCCTTAGCCTACGAACTTACTGGGGTCGTTTCTGATGATGAATTGCTTGATTTGCTGGAGTTGGCATTGTCATCTGACACTTCAAATACAGTTATAAGAGCCCGGGAGTTGATGAGATCAAGGATAGATCCATTACAACTTATATCCCAGCTGGCAAATCTCATTATGGACATTCTTGCATGTAAAGGTCAAGATGGTGGTTCTGAAGCTAGAAGAAGGTTTTATAGTAGACATAACTCTGAAACAGAGCTGCCGAAATTAAGTCATGCATTGAGACTACTTTCTGAATCTGAGAAGCAATTGAAAGTTTCAAAGAATCAAACAACATGGTTTACAGCAGCTCTCCTGCAGCTAAGTTCTGTTGAAAATTCTTCCATGGATGCAAATGATACAAAGTTGTGTTTGAGGGATGCATGTAATGGAGATGCTGATTTGTGCAGTACATCATCTACAGGGGAGAGCTTGAAACATCTTGCTACAGGTCTGCGTGATGGCAAGTCATATAGATTAGGAGTTCAGGAGGATCACAAAGGAACACTGGATTCCATATGGTATGAAGCTACCGGGTTGTGTAAATCTAGCGGGCTCAAGACATTTCTCAGAAAACGGGGGAAATTGTCTTCGCTTTGTGTCAGTCACGGTCTTGCTATTGCTGAGTTGGGGTTCTACCATCGTGACTATGTATCTAAAGCTGAGAAGTCGTGGAAACTGATTGCAAGTTGCCTGCAATTCATAGTGGGTTGTAACATCGAGCTTAGGATCAATCTTGTATCTTGTAAATCTGATTCCAAGTATGCCAAATTGAAGAGGTCATCCTTCAGTTTCTTTAGTTGTTCCCGCAGAATAACCCAGACATCGTTCTCATCAAACGAAGGAGGAAGTGACTCAGACTATGCTGATTCCACCGCTGAAAAACCCATGATGAGGGATAGAACTCAGACTTATTCCTCTGATGGTGGATATCAGGTGCCACCCTGTGAGTGCTATAGAAGGATGGAGGTTGTATCAACTTTGAGAAGTAGTGAGGGGAATCTGCTAAGCTCGGGGAAAAGTTTGTTTCCTAGGTCATGTCAAGAGTCTCAAACTCCAAGGACATCAGGTAAGGTAGAGGGGTGCAACTACACACAAATAGTTTCATCAACCCTTGATTCAAATCATCAATCAAACTGTTTACCCAGAACTCTTTGGCTTCATAAGAAGAAGTTGCATTCTCCTGATAGTTCCCAGATGGTTTTCCAGGGTGCCCAACAGCAGAAAAATTTTGATTTGTCTATCCCCCAGTACACATGTTCTGAGACATATAACTATCCTAGTGAGCCCTTGAGGAAGACGTGGAATGCAGGGCTTCAGCAACACAAATCGCATATAGGGAGATGGGTTCTTCCCTGTTCCACTGCTAAGTAA	2973	0.4215	MDGRRHSVDIPISKTLVALRRVRSLRDPTTNSMSKLASLIDNVHWENSSGNGISLRFLDASHTCGSDDNVILRSRNLGLKGLREQDVTDFELNSGLLNSELNSFGNACHERQQDDELVHSNLNQEGVSGNMSPSESCCSNHRGKRLDLACITPPRDNLNDGDSCYEASAGSSQLGRIEHFKLTRNSLRKDQEKPSEGDIASHVGSPWLTIGDTLSGHSAPTNISRDVDPVDNIHQGCGISCCWSKSPRFMESGLYSDLEDRPLMSQHIDEIDLYGHRSLRHISGELSPSLETPRSLTSKFRPKSFSELVGQNVVARSLLGAISMGRIMSFYLFHGPRGTGKTSAARIFAAALNCLSLEEQKPCGLCRECILFFSGRSTDVKQVDSLRINRTDKVKSLVKNASIPPVSSRFKVFIIDECQLLHGETWASLLNILENLSQHVVFVMITPDLDKLSRSAISRAQRYHFPKIKDADIASRLEQICVEECLDFEQAALDFIAAKSCGSLRDAEIMLDQLSLLGKKITVSLAYELTGVVSDDELLDLLELALSSDTSNTVIRARELMRSRIDPLQLISQLANLIMDILACKGQDGGSEARRRFYSRHNSETELPKLSHALRLLSESEKQLKVSKNQTTWFTAALLQLSSVENSSMDANDTKLCLRDACNGDADLCSTSSTGESLKHLATGLRDGKSYRLGVQEDHKGTLDSIWYEATGLCKSSGLKTFLRKRGKLSSLCVSHGLAIAELGFYHRDYVSKAEKSWKLIASCLQFIVGCNIELRINLVSCKSDSKYAKLKRSSFSFFSCSRRITQTSFSSNEGGSDSDYADSTAEKPMMRDRTQTYSSDGGYQVPPCECYRRMEVVSTLRSSEGNLLSSGKSLFPRSCQESQTPRTSGKVEGCNYTQIVSSTLDSNHQSNCLPRTLWLHKKKLHSPDSSQMVFQGAQQQKNFDLSIPQYTCSETYNYPSEPLRKTWNAGLQQHKSHIGRWVLPCSTAK	990

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bach2g02213	990	MobiDBLite	consensus disorder prediction	808	841	-	-
	Bach2g02213	990	Gene3D	-	289	466	IPR027417	-
	Bach2g02213	990	SUPERFAMILY	post-AAA+ oligomerization domain-like	538	639	IPR008921	GO:0003677\|GO:0006260
	Bach2g02213	990	Gene3D	-	469	531	-	-
	Bach2g02213	990	CDD	HLD_clamp_pol_III_gamma_tau	468	531	IPR045085	-
	Bach2g02213	990	NCBIfam	DNA polymerase III subunit gamma/tau	295	641	IPR012763	GO:0003887\|GO:0005524\|GO:0006260\|GO:0009360
	Bach2g02213	990	Gene3D	-	532	645	-	-
	Bach2g02213	990	SMART	AAA_5	327	470	IPR003593	GO:0016887
	Bach2g02213	990	FunFam	DNA polymerase III subunit gamma/tau	469	531	-	-
	Bach2g02213	990	PANTHER	REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT	298	689	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Bach2g02213	Bach-Chr2	28948396	28952038	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bach2g02213	286	580	Core DNA Replication Machinery Family	AT1G21690	23.588	1.98e-12	67.8

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bach2g02213	-		-	pcin:129308301	1271.91

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Bach5g00243	5	1715851	1718870	Bach2g02213	2	28948396	28952038	BWGD
	Bach2g02213	2	28948396	28952038	Bach2g02213	2	28948396	28952038	ECH

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