Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach2g02117 ATGAATTCAATGAGTCATAAACCCAATCAGAGAAATCGTCGTATTCTTTCATTTCCGGCAGTCCAGCCTTGCGAAGGCATATCTCCGGCCACCCTTGTCACCTCTTTGATTACTCTCTCACACAAGATATGCTGTTTCCGATCCAACTTCTTCCCCACCCAACGACGAAATGCCAGAGAAACAATACGTCAGATTGGTATCATTCTTATATTCCTGGAGGAAATTGCAGAGCGCGGTCTGATGATCCCGGACTCCTCTGTTCTTTGCTTCTCGGAGCTCCACCTGACCTCTCAAAAAATTCACTCGCTAATGGAAGATTGTACTCGGAAAGGTGCTCGCCTTTGGATGCTAATGAAGTCTCCATTGATTGCAACCCAATTTCGGCATCTAATTCGTTCTGTAGCCGCTGCTCTTGACGTTTTGCCATTGCATCTCATCGAGGTTTGCGGTGAAGTAAAAGAGTTAGTGGATTTAGTAGCCACGCAAGCTCGGAAAGTGAAATTCGAACTCGACCCAGATGATGAACGGACTAGAAAAAGAGTTCATTTGGTTTTGCATCAGTTTGAGAGGGGAACCGAACCCGATTCGAATGATATGAATCGAATCCTTGATTACCTCGAAATTAAGAGCTGGGATGATTGTAACCAAGAAGTCAGATTCTTCGAAGATGAAATTAGTTTCCAGTGCTCTGATTCTGATGAAAGTGAAGTCCCCTTTTTGAGTGATTTGGCCGGGTTCTTAAGCTACTGTAGAGGAGTGATATTTGATACTCTGGATTTCAGTTTACGCAATACCACGGATCAATCAGAAGGCAGGTGCAGCACAGAGATTCATACTTGCATAAATCCAGAGGATTTTCGGTGTCCAATTTCCCTGGAGCTAATGACTGATCCCGTTGCTGTATCCACGGGCCAAACTTATGATCGAGCTTCTATTCAGAAATGGCTCAAAGCTGGAAATTTCATATGCCCCAAAACAGGGGAGAAGCTAACAAACACTGACTTAATCCCAAACACAACTCTCAAAAACCTAATCCAACAGTTCTATGCTGAAAATGGCATTTCCCTCACAAAGTCCGTTAACCGGAGTCGTGACATAACGAGGACCATAGTCCCGGGAAGTCCAGTGGTAGCGCAAGCCATGCAATTTCTTTCGTGGTTTCTTGCAGGGAGGCTTGTGTTTGGAACAGTTGTGCAGCAAAACAAAGCTGCTTATGAGATTCGTTTGCTTGCAAGGTCCAACATTTTCAACAGGGCTTGTTTGATTCAAGTGGGCACAGTATCAGCTCTGTTAAATCTTTTGGATACGGATGATCAATCCATGCAAGAGAACGCAATCGCTGCTTTGTTGAAGCTCGCAAAGCATATTAATGGCAAGGAAATGATCATGGAAAGTGGTGGTCTAACACCGGTCCTAATGGTTCTCAAAAGTGGGCTAAGTTTGGAAGCTCGGAAAAGCGCAGCTGCTATTGTATTCTATCTTTGTTCGGTGAAAGAGTACAGGAAATTGATAGGAGAAAACCCTGAGGCAATTCCAGCTTTAGTAAAGTTGATCAAGGAAGGAACAACTCTGGGGAAAAATAATGCCGTGGTCGCCATTTTTGGGCTGCTTTTTCTGCCCAAGAATCATCAGAGGGTGCTTGCAGCTGGTATTGTTCCTGCGCTACTTGATATTTTAGCTTGCTTAGAAAAAGCTGACCTTGTCAGTGATTCTTTAGCGGTTCTTGCGGTCTTGACTGAGAGTGTCGAGGGAGCATGTACTATTTTCCAAGCCTCGCCTTTGCGGTTAATCACTGGGATTATGCAATCTTCAACATGCCGTGCAGGGAAAGAGCATTGTGTTTCAATTCTGCAATCACTGTGTGTGCATGTTGGTGCAGAGGTGGTGGCTGTTCTAGCGAAGGACCCTTCACTCATGCCTTCGCTTTACTCACTGATCACCCATGGTACCTCTCATGCAACTAGGAAAGCACGTTCCCTCATTAAAATTCTACTTGAATTCAACCAAGCTACGAGTTCTGGATTCACGGGTTCATCAGTTGCACAAGAACGATCCCTTCACGTTTGGTGA 2070 0.4469 MNSMSHKPNQRNRRILSFPAVQPCEGISPATLVTSLITLSHKICCFRSNFFPTQRRNARETIRQIGIILIFLEEIAERGLMIPDSSVLCFSELHLTSQKIHSLMEDCTRKGARLWMLMKSPLIATQFRHLIRSVAAALDVLPLHLIEVCGEVKELVDLVATQARKVKFELDPDDERTRKRVHLVLHQFERGTEPDSNDMNRILDYLEIKSWDDCNQEVRFFEDEISFQCSDSDESEVPFLSDLAGFLSYCRGVIFDTLDFSLRNTTDQSEGRCSTEIHTCINPEDFRCPISLELMTDPVAVSTGQTYDRASIQKWLKAGNFICPKTGEKLTNTDLIPNTTLKNLIQQFYAENGISLTKSVNRSRDITRTIVPGSPVVAQAMQFLSWFLAGRLVFGTVVQQNKAAYEIRLLARSNIFNRACLIQVGTVSALLNLLDTDDQSMQENAIAALLKLAKHINGKEMIMESGGLTPVLMVLKSGLSLEARKSAAAIVFYLCSVKEYRKLIGENPEAIPALVKLIKEGTTLGKNNAVVAIFGLLFLPKNHQRVLAAGIVPALLDILACLEKADLVSDSLAVLAVLTESVEGACTIFQASPLRLITGIMQSSTCRAGKEHCVSILQSLCVHVGAEVVAVLAKDPSLMPSLYSLITHGTSHATRKARSLIKILLEFNQATSSGFTGSSVAQERSLHVW 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach2g02117 689 Pfam U-box domain 283 352 IPR003613 GO:0004842|GO:0016567
Bach2g02117 689 ProSiteProfiles U-box domain profile. 281 355 IPR003613 GO:0004842|GO:0016567
Bach2g02117 689 FunFam RING-type E3 ubiquitin transferase 362 675 - -
Bach2g02117 689 PANTHER U BOX DOMAIN-CONTAINING 83 664 - -
Bach2g02117 689 SUPERFAMILY ARM repeat 399 665 IPR016024 -
Bach2g02117 689 SMART arm_5 413 454 IPR000225 GO:0005515
Bach2g02117 689 SMART arm_5 539 580 IPR000225 GO:0005515
Bach2g02117 689 SUPERFAMILY RING/U-box 282 356 - -
Bach2g02117 689 CDD RING-Ubox_PUB 283 335 IPR045210 -
Bach2g02117 689 Gene3D - 354 672 IPR011989 -
Bach2g02117 689 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 425 467 IPR000225 GO:0005515
Bach2g02117 689 SMART Ubox_2 285 348 IPR003613 GO:0004842|GO:0016567
Bach2g02117 689 FunFam RING-type E3 ubiquitin transferase 282 354 - -
Bach2g02117 689 Pfam Armadillo/beta-catenin-like repeat 417 453 IPR000225 GO:0005515
Bach2g02117 689 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 282 353 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach2g02117 Bach-Chr2 28323606 28325675 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach2g02117 4 689 U-box Gene Family AT1G60190 39.742 3.00e-171 504
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach2g02117 - - qsa:O6P43_022729 884.019