Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bach2g01949 ATGGCGGAATCAGTTACTCCAGATGCGATTTCTATCTTGCTCGCCAACCCATCCCCGGATTCTTCATCGGAGCTTCCGGAGGTTGTTGTACAAGTTCTAGATCTCAAACAAAGCGGTAATCGATATATGTTTACTGCTAGTGATGGAAAAAAGAAGCTAAGAGCAATTCTCCCCTCAAATCAGAATTCTCAGGTCATGTCAGGAAATATTCAGAATCTGGGTCTCATTCGCATCCTTGATTATACTCTCAACGATATCCCAAATAAGTTAGAGAAATATCTTATTGTTACAAAATGTGAACCGGTCTGTCCTGCACTTGAAATGGAGATAAAATCGGAGGTCAAGAATGTGGAAGCTGGTGTTCTTTTGGAACCAAAGAAAGAGAAAGAAATCAATAGTGAGGTGAAAAGTGAAGGGGCTGGCATTCTTTTGAAGCCAAAGCAAGAAATAGTAGCTAAATCAGCTGCTCAGATCGTACAAGAACAACATGCAAACATGGCTCCTGCTGCGCGAATGGCAATAACACGTAGGGTTCGTCCTCTTGTTTCTCTGAATCCTTATCAAGGCAATTGGACAATAAAGGTGCGTGTTACGAACAAAGGGAACATGCGCACCTATAAGAACGCCAGAGGGGAAGGTTGTGTATTCAATGTGGAATTGACAGATGAAGACGGCACACAGATCCAAGCAACGATGTTCAATGAAGCTGCAAGGAAATTCTATGAGAAGTTTGTACTTGGAAAGGTTTACTATATTTCAAATGGAACACTAAAAGTTGCTAACAAGCAGTTCAAAACTGTTCAAAATGATTACGAAATGACATTAAATGAAAATTCTGAGGTGGAAGAGGCAGCCAATGAAGCTAGTTTTGTTCCAGAAACCAGATTCAATTTTGTCCAGATTGATCAGTTGGGTCCTTATGTCAATAGGAATGATCTTGTGGATGTGATTGGAGTTGTTCAGAATGTGTCTCCATCAATGAGCATTCGTAGGAAGAGTAACAATGAGACTGTCCCTAAACGCGATATTACTGTTGCTGATGAAACAAAGAAGACAGTTGTTGTTTCCTTGTGGAATGACCTTGCAACTGGTGTCGGGCAGGAGTTGCTGGATGTTGCCGATAAATCTCCTATAGTTGCCATCAAATCCCTCAAGGTTGGGGACTTTCAAGGTAGGCTAAAGCCTTATTTGTCTGATATATTTCATAGGAGTATAAGAGATACTAATTTTCTCGTACTTGAATTTTCTTTTTCAGGGGTTTCCCTGTCAGCTATAAGCAAGAGTACAATTCTAGTAAATCCAGACATACCTGAAACAAAGAAGCTTAGATGCTGGTATGATTCTGAAGGTAAAGGTGCTTCAATGGCCTCTATAGGCTCTGGTTTGAGTCCGGTGTCAAGGAATGGAATGAGATCAATGTACTCTGACCGTGTTTCTCTATCACACATAACCTCAAATCCATCCTTGGGGGATGACAAGCCTGCGTTTTTCAGTATTAGAGCATACGTAAGCTTTATCAAGCCTGATCAGGCAATGTGGTACCGTGCTTGTAAAACTTGCAACAAAAAGGTCACAGAAGCCATTGGTTCTGGGTATTGGTGCGAAGGCTGCCAGAAAACTGATGAAGAGTGCAGTTTAAGATACATTTTGGTTGTAAAAGTTTCTGATGCAAGTGGTGAAGCTTATGTCTCCGTCTTCAATGAAGAAGCTGAGAGGATCGTTGGGTGCTCTGCTGATGAGCTAGATAACCTGAAGTCGCAGGAGGGTGAAGATAATCCATACCAACAAAAACTGAAGCAAGCCACTTGGGTTTCTCATCTTATGCGAGTTAGCGTTTCTCAGAATGAGTATATGAATGAGAAGAGAAAGAGAATCACGGCCCGAGCAGTGGCCCCAGTTGACTTTGCTGCAGAATCAAGATTTCTCTTGGAAGAGATATCAAAGATGAAAGTTTCTCAATAA 1962 0.4144 MAESVTPDAISILLANPSPDSSSELPEVVVQVLDLKQSGNRYMFTASDGKKKLRAILPSNQNSQVMSGNIQNLGLIRILDYTLNDIPNKLEKYLIVTKCEPVCPALEMEIKSEVKNVEAGVLLEPKKEKEINSEVKSEGAGILLKPKQEIVAKSAAQIVQEQHANMAPAARMAITRRVRPLVSLNPYQGNWTIKVRVTNKGNMRTYKNARGEGCVFNVELTDEDGTQIQATMFNEAARKFYEKFVLGKVYYISNGTLKVANKQFKTVQNDYEMTLNENSEVEEAANEASFVPETRFNFVQIDQLGPYVNRNDLVDVIGVVQNVSPSMSIRRKSNNETVPKRDITVADETKKTVVVSLWNDLATGVGQELLDVADKSPIVAIKSLKVGDFQGRLKPYLSDIFHRSIRDTNFLVLEFSFSGVSLSAISKSTILVNPDIPETKKLRCWYDSEGKGASMASIGSGLSPVSRNGMRSMYSDRVSLSHITSNPSLGDDKPAFFSIRAYVSFIKPDQAMWYRACKTCNKKVTEAIGSGYWCEGCQKTDEECSLRYILVVKVSDASGEAYVSVFNEEAERIVGCSADELDNLKSQEGEDNPYQQKLKQATWVSHLMRVSVSQNEYMNEKRKRITARAVAPVDFAAESRFLLEEISKMKVSQ 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bach2g01949 653 CDD RPA1_DBD_A 180 283 - -
Bach2g01949 653 Pfam Replication protein A OB domain 308 392 IPR031657 -
Bach2g01949 653 NCBIfam replication factor-a protein 1 (rpa1) 3 392 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Bach2g01949 653 SUPERFAMILY Nucleic acid-binding proteins 475 649 IPR012340 -
Bach2g01949 653 SUPERFAMILY Nucleic acid-binding proteins 179 287 IPR012340 -
Bach2g01949 653 SUPERFAMILY Nucleic acid-binding proteins 296 451 IPR012340 -
Bach2g01949 653 Gene3D - 177 286 IPR012340 -
Bach2g01949 653 SUPERFAMILY Nucleic acid-binding proteins 1 108 IPR012340 -
Bach2g01949 653 Pfam OB-fold nucleic acid binding domain 191 277 IPR004365 GO:0003676
Bach2g01949 653 Gene3D - 291 459 IPR012340 -
Bach2g01949 653 Gene3D - 461 649 IPR012340 -
Bach2g01949 653 FunFam Replication protein A subunit 4 114 - -
Bach2g01949 653 CDD RPA1_DBD_C 480 648 IPR047192 -
Bach2g01949 653 Pfam Replication factor-A protein 1, N-terminal domain 5 102 IPR007199 GO:0003677|GO:0005634|GO:0006260
Bach2g01949 653 PANTHER REPLICATION FACTOR A 1, RFA1 191 612 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Bach2g01949 653 Gene3D - 4 113 IPR012340 -
Bach2g01949 653 FunFam Replication protein A subunit 177 286 - -
Bach2g01949 653 CDD RPA1_DBD_B 313 447 - -
Bach2g01949 653 FunFam Replication protein A subunit 462 649 - -
Bach2g01949 653 Pfam Replication factor-A C terminal domain 496 642 IPR013955 -
Bach2g01949 653 Coils Coil 567 587 - -
Bach2g01949 653 FunFam Replication protein A subunit 290 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bach2g01949 Bach-Chr2 27263736 27267286 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bach2g01949 1 653 Core DNA Replication Machinery Family AT5G08020 66.514 0.0 913
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bach2g01949 K07466 - qsa:O6P43_002222 1020.38