Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bach2g01925 | ATGTCGTACGGCTCAGACCCAGCTTCGACTTCCTCGAACAAACGACTGAAAACTCAGAGTTCGACCAATGGATCAACCTCTGAAAACGCCGGTGACGATAAGCAGTGCGGAATTTGCTATTCCGATAATGGGGTATCAATCAGAGGTGAAATTGATTGCTGCAACCACTACTTTTGCTTCGTGTGCATCATGGAATGGGCTAAACATGAGTCTCGATGCCCAATCTGTAGACAGAGATTCTCCACTATTCGTAGACCGCCCAAGCCCGGAGTATTTCCTTCCTTTAGGGTCGTTAAGGTTCCTGTTCGCGACCAGGTTTACCATCATTATGGAAATATGACAACTGGTCCCGTTGATCCTTATGCAGAAGTGCAGTGTTGTGTGTGTCATAATAATAGTGATGATAGTATGCTATTGCTTTGTGATCTTTGTGATACCGCTTCTCATACATACTGCGTCGGCCTGGGCTATACTGTGCCTGAAGGGGATTGGTTTTGTCATGATTGTACTGTTTCCCGGGCGTGCTCCAGCGACAATGATGAAATAAACCAACCAAATGTCATGTCAAGGGATGAGACTGGTGTTAGCATGTTTGATATTCAGAGAGAACCAAACAGGCAAGTGGTTACCAGACCAAGAACACCTCCTTCACAACAAAACCAGTCTTCTAGTCATGAGTTGGGCGCAAGGACATTGAATCGTTGTCGCAATGTGCGGCGTAGCATACAAGCACTGCGCGAAAATTGGGATGTTATAAGAAATGGTTCATTAGGATTCTGTAGCAGTTCTAGATATGATGAGCTAATTAGTCAAAGACAAAACGGCAAATCAGATCAACCGCATTCTGTGCCTTCCATAAGCCCGCAACATTCCTCAATCCAACATGGTCCTTCTAGCAACAAACCGCGTGACAACGGCTCCAAAGATGTTGACAAGGCCTGGAAAATGATGAGCAGGGCAAAGATGATGCAGCAAACTCAGCAAGGAACCAGTGGCGTCAAGAAAATATTCGAAAATCACCGGCCTTCAAAGTTGCAAGTGCAGGAGCAGAGAAGAGTCACAACTAAAAAGGTGATACAACATATTAGGGACCATTCAGCTATTCAATTGCCAGAATATTGTGAACTTCCATTTACCAGCAAGGTTCATGCTAATAGTATTCAGGGTGTTTCCTGTCATGAAAGTGGAGATAACAAATTTTCTAAGGAGCAAAGCATGTTTAATTCCAGAGAAAGTTTCGTAGGTTCGGCTCCTTCTCATGGAAAGTGTGTCGAGACATCTTCATCTGGCAGAGAGGTGGGTAATTCTAATAGAAATCGAAGATTGGATGAAAGTTGTAAGGGTGGAAAGACAAGCAAAAATGATGCTGCCAAAAACGAGATAAAGTCTCTTGTCAAGCTCAATCTGAAGGTTCTAAGCCGGGATAAAAAATTAGGTGTTGACACGTTTAAGGAAGTTGCAAGATGTGCAACCCATACCATCTTGTCTGTTTGCAGATCTGAGCAGCAAAAGTCTGATATTTTCTCCTCATGCTCAGTGCGCAAATGCGACCACAGTGAAGATGATGCTCAGCCGTTTCATAGATCGACCTTAATGCCTAATTCTTGTAGACAATGCTTTTATGCTTTTGTAAACAGTGTCGTGAACTCCATTATGTTGGACAGAGTGGGTTCTACTAGAACGTTATGA | 1689 | 0.4358 | MSYGSDPASTSSNKRLKTQSSTNGSTSENAGDDKQCGICYSDNGVSIRGEIDCCNHYFCFVCIMEWAKHESRCPICRQRFSTIRRPPKPGVFPSFRVVKVPVRDQVYHHYGNMTTGPVDPYAEVQCCVCHNNSDDSMLLLCDLCDTASHTYCVGLGYTVPEGDWFCHDCTVSRACSSDNDEINQPNVMSRDETGVSMFDIQREPNRQVVTRPRTPPSQQNQSSSHELGARTLNRCRNVRRSIQALRENWDVIRNGSLGFCSSSRYDELISQRQNGKSDQPHSVPSISPQHSSIQHGPSSNKPRDNGSKDVDKAWKMMSRAKMMQQTQQGTSGVKKIFENHRPSKLQVQEQRRVTTKKVIQHIRDHSAIQLPEYCELPFTSKVHANSIQGVSCHESGDNKFSKEQSMFNSRESFVGSAPSHGKCVETSSSGREVGNSNRNRRLDESCKGGKTSKNDAAKNEIKSLVKLNLKVLSRDKKLGVDTFKEVARCATHTILSVCRSEQQKSDIFSSCSVRKCDHSEDDAQPFHRSTLMPNSCRQCFYAFVNSVVNSIMLDRVGSTRTL | 562 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bach2g01925 | 562 | SMART | PHD_3 | 125 | 170 | IPR001965 | - | |
| Bach2g01925 | 562 | ProSitePatterns | Zinc finger RING-type signature. | 54 | 63 | IPR017907 | - | |
| Bach2g01925 | 562 | ProSiteProfiles | Zinc finger PHD-type profile. | 123 | 172 | IPR019787 | - | |
| Bach2g01925 | 562 | Pfam | PHD-finger | 126 | 171 | IPR019787 | - | |
| Bach2g01925 | 562 | ProSiteProfiles | Zinc finger RING-type profile. | 36 | 77 | IPR001841 | - | |
| Bach2g01925 | 562 | SUPERFAMILY | FYVE/PHD zinc finger | 123 | 172 | IPR011011 | - | |
| Bach2g01925 | 562 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 111 | 182 | IPR013083 | - | |
| Bach2g01925 | 562 | PANTHER | F18C1.6 PROTEIN | 29 | 555 | - | - | |
| Bach2g01925 | 562 | SMART | ring_2 | 36 | 76 | IPR001841 | - | |
| Bach2g01925 | 562 | MobiDBLite | consensus disorder prediction | 271 | 301 | - | - | |
| Bach2g01925 | 562 | MobiDBLite | consensus disorder prediction | 201 | 232 | - | - | |
| Bach2g01925 | 562 | MobiDBLite | consensus disorder prediction | 207 | 230 | - | - | |
| Bach2g01925 | 562 | MobiDBLite | consensus disorder prediction | 412 | 435 | - | - | |
| Bach2g01925 | 562 | MobiDBLite | consensus disorder prediction | 1 | 31 | - | - | |
| Bach2g01925 | 562 | MobiDBLite | consensus disorder prediction | 436 | 454 | - | - | |
| Bach2g01925 | 562 | MobiDBLite | consensus disorder prediction | 271 | 309 | - | - | |
| Bach2g01925 | 562 | MobiDBLite | consensus disorder prediction | 412 | 454 | - | - | |
| Bach2g01925 | 562 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 7 | 85 | IPR013083 | - | |
| Bach2g01925 | 562 | Pfam | Ring finger domain | 35 | 77 | IPR001841 | - | |
| Bach2g01925 | 562 | SUPERFAMILY | RING/U-box | 29 | 92 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Bach2g01925 | Bach-Chr2 | 27068515 | 27071009 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Bach2g01925 | 117 | 173 | C2H2 Transcription Factor Family | AT3G01460 | 39.655 | 5.24e-09 | 57.4 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TR | PHD | Bach2g01925 | PHD | 6.3e-08 | CL0390 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bach2g01925 | - | - | pcin:129296896 | 533.487 |